Overview of drawProteins
This package has been created to allow the visualisation of protein schematics based on the data obtained from the Uniprot Protein Database.
The basic workflow is:
to provide one or more Uniprot IDs
get a list of features from the Uniprot API
draw the basic chains of these proteins
add features as desired
drawProteins uses the package `httr` to interact with the Uniprot API and extract a JSON object into R. The JSON object is used to create a data.table.
The graphing package `ggplot2` is then used to create the protein schematic.
The Vignette gives a good overview of the package.
Sample script on [R for Biochemists blog](http://rforbiochemists.blogspot.co.uk/2017/11/using-drawproteins-for-draw-nf-kappab.html)
The `master` version of this package is available through
[Bioconductor](http://bioconductor.org/packages/release/bioc/html/drawProteins.html).
The `development` version is currently available here through GitHub.
To install and use development branch:
=======
This package is available through
[Bioconductor](https://bioconductor.org/packages/devel/bioc/html/drawProteins.html).
Installation instructions and documentation are [available](https://bioconductor.org/packages/devel/bioc/html/drawProteins.html).
To install from Github:
```{r, eval = FALSE}
if (!require(devtools)) {
install.packages('devtools')
}
dev_mode(on=TRUE)
devtools::install_github('brennanpincardiff/drawProteins')
```
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Please cite the following article when using `drawProteins`:
__Brennan P__. drawProteins: a Bioconductor/R package for reproducible and
programmatic generation of protein schematics [version 1; referees: 2 approved].
__*F1000Research*__ 2018, 7:1105
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Feedback is very welcome.
Please raise
[Github issues](https://github.com/brennanpincardiff/drawProteins/issues)
to provide bug reports, give feedback or request features.