broadinstitute 2020-06-01-Evidence-of-state-switching-in-single-cell-drug-response-Broad issues - Githubissues

broadinstitute / 2020-06-01-Evidence-of-state-switching-in-single-cell-drug-response-Broad

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Absolute proportional difference of clusters from controls

#13 hkhawar opened 3 years ago
3
Proportional differences

#12 hkhawar opened 3 years ago
1
UMAP_visualization of K-cluster labels

#11 hkhawar opened 3 years ago
0
Median Cluster cell counts for all drugs at each dose

#10 hkhawar opened 3 years ago
0
Absolute cluster counts for drug doses

#9 hkhawar opened 3 years ago
0
K-means clustering and proportional differences in clusters between drug high dose and DMSO controls

#8 hkhawar opened 3 years ago
0
Compound UMAPs with DMSO

#7 gwaybio opened 3 years ago
5
Adding single cell normalization notebooks (standardize, spherize, Harmony)

#6 gwaybio closed 3 years ago
1
Method to consider

#5 gwaybio opened 3 years ago
0
Consider pycytominer for whitening

#4 gwaybio opened 3 years ago
0
Harmony batch effect correction

#3 gwaybio opened 3 years ago
11
Whitening performed to correct batch affects

#2 hkhawar opened 3 years ago
25
Metadata and Platemap

#1 hkhawar opened 3 years ago
1