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broadinstitute
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position-effect-correction
BSD 3-Clause "New" or "Revised" License
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chore: update other deps after adressing vulnerabilities
#33
alxndrkalinin
closed
2 months ago
0
Bump notebook from 7.2.1 to 7.2.2
#32
dependabot[bot]
closed
2 months ago
0
Bump pyarrow from 11.0.0 to 14.0.1
#31
dependabot[bot]
closed
2 months ago
0
Bump aiohttp from 3.9.5 to 3.10.2
#30
dependabot[bot]
closed
2 months ago
0
Bump black from 23.12.1 to 24.3.0
#29
dependabot[bot]
closed
2 months ago
0
bump deps to address security issues
#28
alxndrkalinin
closed
2 months ago
0
bump jupyterlab
#27
alxndrkalinin
closed
2 months ago
0
bump poetry deps
#26
alxndrkalinin
closed
3 months ago
0
Bump setuptools from 67.8.0 to 70.0.0
#25
dependabot[bot]
closed
3 months ago
1
Related work: Adjustment of plate positional effects
#24
shntnu
opened
11 months ago
0
regress cell count from mean well corrected profiles
#23
alxndrkalinin
closed
1 year ago
0
Comparison of AP values by evalzoo vs copairs
#22
alxndrkalinin
closed
1 year ago
0
Classification-based analysis of plate position effect
#21
shntnu
opened
1 year ago
3
Classifier
#20
shntnu
opened
1 year ago
3
Test DINO features
#19
shntnu
closed
1 year ago
1
add per-position mean feature visualizations & metrics with gene symbols
#18
alxndrkalinin
closed
1 year ago
0
Check for plate layout issues by detecting negcons
#17
shntnu
closed
1 year ago
0
update cell count adjustments
#16
alxndrkalinin
closed
1 year ago
0
Regressing out cell count
#15
alxndrkalinin
opened
1 year ago
11
Regressing out cell count
#14
alxndrkalinin
closed
1 year ago
0
rerun from scratch
#13
alxndrkalinin
closed
1 year ago
0
Cell count variation
#12
alxndrkalinin
opened
1 year ago
0
cell count variability
#11
alxndrkalinin
closed
1 year ago
0
update
#10
alxndrkalinin
closed
1 year ago
0
Baseline correction (subtracting well mean)
#9
alxndrkalinin
opened
1 year ago
0
save mAP visualizations as figures
#8
alxndrkalinin
closed
1 year ago
0
Per-batch plate effects visualizations
#7
alxndrkalinin
opened
1 year ago
0
fix visualization
#6
alxndrkalinin
closed
1 year ago
0
evalzoo on the subset of ORF data
#5
alxndrkalinin
closed
1 year ago
1
load profiles using parquet datasets
#4
shntnu
closed
1 year ago
1
init evalzoo
#3
shntnu
closed
1 year ago
0
Document project plan
#2
shntnu
closed
1 year ago
12
Initialize
#1
shntnu
closed
1 year ago
0