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broadinstitute
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tgg_methods
Repo for miscellaneous methods developed by the methods group that don't fit anywhere else
MIT License
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Updated hail version in Dockerfile
#42
ch-kr
closed
2 years ago
0
Updated hail version in Dockerfile
#41
ch-kr
closed
2 years ago
0
Updated Dockerfile to install hail 0.2.79
#40
ch-kr
closed
2 years ago
0
Mw/update imports
#39
mike-w-wilson
closed
2 years ago
1
Wphu/make remap tsv
#38
williamphu
closed
4 months ago
2
add WES import_vcf.py script
#37
williamphu
closed
2 years ago
2
add author formatting script
#36
klaricch
closed
4 months ago
0
add author formatting script
#35
klaricch
closed
2 years ago
0
add ibd script
#34
klaricch
closed
2 years ago
0
Added gawk to Dockerfile
#33
ch-kr
closed
3 years ago
0
Added util to get job names, also ran BLACK and reordered imports
#32
ch-kr
closed
2 years ago
0
Reorganize tgg_methods
#31
ch-kr
closed
2 years ago
0
Rename test_batch.py to example_batch.py
#30
bw2
closed
2 years ago
0
Added GCS connector to dockerfile
#29
ch-kr
closed
3 years ago
0
Add script to compare objects in GCS directories
#28
nawatts
closed
3 years ago
5
Added dill to Dockerfile
#27
ch-kr
closed
3 years ago
0
Subset
#26
ch-kr
closed
3 years ago
0
Dockerfile for methods VM
#25
mike-w-wilson
closed
3 years ago
2
Incorporate more complex family structures
#73
klaricch
closed
4 months ago
2
Track previously reviewed discrepancies
#75
klaricch
closed
4 months ago
2
Add pedigree check
#74
klaricch
closed
4 months ago
2
use session cookie for auth
#24
hanars
closed
3 years ago
0
Address callrate flagging and callrate threshold in seqr sample qc platform assignment
#23
mike-w-wilson
opened
3 years ago
0
Add documentation to seqr_sample_qc pipeline
#22
mike-w-wilson
opened
3 years ago
0
Updated imports and reorganize the seqr scripts under seqr directory
#21
mike-w-wilson
closed
3 years ago
0
add referer header to fix csrf issue
#20
hanars
closed
3 years ago
0
CSRF verification failing on pedigree script
#19
mike-w-wilson
closed
3 years ago
1
add csrf to pedigree pull
#18
hanars
closed
3 years ago
0
fix bucket caching across jobs
#17
bw2
closed
4 years ago
0
Extract chrM pipeline
#16
bw2
closed
4 years ago
0
Compare directories md5s
#15
mike-w-wilson
closed
3 years ago
1
Script to pull seqr pedigrees using API
#14
mike-w-wilson
closed
4 years ago
3
Address sample callrate filtering
#13
mike-w-wilson
opened
4 years ago
1
batch utils
#12
bw2
closed
4 years ago
0
Pedcheck
#11
klaricch
closed
2 years ago
1
Create a single VCF from a pipeline ops delivered sharded VCF
#10
mike-w-wilson
closed
2 years ago
0
Added code to subset VCF/MTs and export VCF
#9
ch-kr
closed
4 years ago
0
Added code to search CMG datasets for specific variant
#8
ch-kr
closed
4 years ago
0
Updated imports from common repos
#7
mike-w-wilson
closed
4 years ago
3
add script to call sex
#6
klaricch
closed
2 years ago
1
seqr sample qc pipeline
#5
mike-w-wilson
closed
4 years ago
2
Testing Slack integration.
#4
gtiao
closed
6 years ago
0
testing push
#3
mike-w-wilson
closed
6 years ago
0
HELLO WORLD
#2
gtiao
closed
6 years ago
0
starting seqr sample qc pipeline at last
#1
gtiao
closed
6 years ago
0
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