Integrate gnomAD v4 data - Githubissues

broadinstitute / variant-curation-portal

Web application for curating loss of function variants

https://lof.curation.broadinstitute.org

MIT License

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Integrate gnomAD v4 data #258

Closed rileyhgrant closed 8 months ago

rileyhgrant commented 8 months ago

Resolves #259

To allow for pulling and displaying of v4

Adds the option to pull gnomad v4 variants to the variant pulling script.
Updates django view to return both GRCh37 and GRCh38 variants, using params where needed
Updates frontend to use query params to distinguish dataset
Updates frontend curate pages to reference gnomAD v4 pages instead of v3
Updates search to allow searching GRCh37 or GRCh38 (#184)

Also:

Splits the CI into two files to that only relevant CI gets run on a PR
Bumps Python version (resolves #235, resolves #253)
Pins hail version to allow reading of the v4 Hail Table
Minorly updates docs