bsmn bsmn-pipeline issues

bsmn / bsmn-pipeline

BSMN common data processing pipeline

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issues

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hg38 versions of gnomad and PON

#31 gevro opened 11 months ago
2
AWS Parallelcluster 3 support

#30 genomax opened 1 year ago
3
PON Mask for hg38

#29 wdecoster closed 3 years ago
2
fixing typo

#28 wdecoster closed 3 years ago
0
I'm fairly certain the GATK3 download link install_tools uses is broken

#27 DCGenomics opened 4 years ago
1
Installfix

#26 attilagk opened 4 years ago
0
adding strelka paired mode

#25 YifanWang0801 opened 5 years ago
0
Douym update install

#24 douym closed 4 years ago
0
Mutect2 single sample workflow

#23 sean-cho closed 5 years ago
0
Some bug fixes of variant calling pipeline & Add new job script templates

#22 bintriz closed 5 years ago
0
what is $PU?

#21 kdaily opened 5 years ago
2
test first step of containerized, cwl pipeline

#20 kdaily closed 5 years ago
2
test existing pipeline implementation

#19 kdaily opened 5 years ago
26
Recommended install location in README.md

#18 attilagk closed 5 years ago
0
Edits

#17 attilagk closed 5 years ago
0
Small edits on README.md

#16 attilagk closed 5 years ago
1
Pull request tj update

#15 bintriz closed 5 years ago
0
Bug fix: install_tools.sh

#14 bintriz closed 5 years ago
0
Tool installer

#13 bintriz closed 5 years ago
0
containerize any components that aren't already

#12 kdaily closed 5 years ago
1
re-write all steps in CWL format

#11 kdaily closed 5 years ago
1
Update README.md

#10 kdaily closed 5 years ago
0
Update README.md

#9 kdaily closed 5 years ago
0
Create requirements.txt

#8 kdaily closed 5 years ago
0
convert jobs/tasks to a more general definition

#7 kdaily closed 5 years ago
1
define cfncluster configuration

#6 kdaily closed 5 years ago
8
document how to generate sample list file

#5 kdaily opened 5 years ago
3
implement without dependency on SGE

#4 kdaily opened 5 years ago
0
identify components that have already been containerized

#3 kdaily closed 5 years ago
5
determine all dependencies

#2 kdaily closed 5 years ago
2
add minimal documentation

#1 kdaily closed 5 years ago
3