Hello there, Thanks a lot for the effort and I would really love to try the pipeline to analyze some spatial data.

When I try to install evreything using the command conda env create -f SpatialTE.yml, it gives me the following error messages. I tried to run it in a bash environment connected via ssh and run it locally on my computer, same thing happened. The SpatialTE.yml is already in my working directory.

Could you advice what could be the potential problem? Thanks a lot!

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

Traceback (most recent call last):
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/conda/exceptions.py", line 1082, in __call__
    return func(*args, **kwargs)
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/conda_env/cli/main.py", line 80, in do_call
    exit_code = getattr(module, func_name)(args, parser)
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/conda_env/cli/main_create.py", line 89, in execute
    spec = specs.detect(name=name, filename=get_filename(args.file), directory=os.getcwd())
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/conda_env/specs/__init__.py", line 43, in detect
    if spec.can_handle():
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/conda_env/specs/yaml_file.py", line 18, in can_handle
    self._environment = env.from_file(self.filename)
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/conda_env/env.py", line 166, in from_file
    return from_yaml(yamlstr, filename=filename)
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/conda_env/env.py", line 143, in from_yaml
    data = yaml_safe_load(yamlstr)
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/conda/common/serialize.py", line 67, in yaml_safe_load
    return yaml.safe_load(string, version="1.2")
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/ruamel_yaml/main.py", line 980, in safe_load
    return load(stream, SafeLoader, version)
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/ruamel_yaml/main.py", line 935, in load
    return loader._constructor.get_single_data()
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/ruamel_yaml/constructor.py", line 109, in get_single_data
    node = self.composer.get_single_node()
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/ruamel_yaml/composer.py", line 78, in get_single_node
    document = self.compose_document()
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/ruamel_yaml/composer.py", line 104, in compose_document
    self.parser.get_event()
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/ruamel_yaml/parser.py", line 163, in get_event
    self.current_event = self.state()
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/ruamel_yaml/parser.py", line 239, in parse_document_end
    token = self.scanner.peek_token()
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/ruamel_yaml/scanner.py", line 182, in peek_token
    self.fetch_more_tokens()
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/ruamel_yaml/scanner.py", line 282, in fetch_more_tokens
    return self.fetch_value()
  File "/opt/anaconda/anaconda3/lib/python3.8/site-packages/ruamel_yaml/scanner.py", line 651, in fetch_value
    raise ScannerError(
ruamel_yaml.scanner.ScannerError: mapping values are not allowed here
  in "<unicode string>", line 27, column 66:
     ... le" content="{&quot;groups&quot;: [], &quot;environmentKey&quot; ...
                                         ^ (line: 27)

$ /opt/anaconda/anaconda3/bin/conda-env create -f SpatialTE.yml

environment variables: CIO_TEST= CONDA_AUTO_UPDATE_CONDA=false CONDA_EXE=/opt/anaconda/anaconda3/bin/conda CONDA_PYTHON_EXE=/opt/anaconda/anaconda3/bin/python CONDA_ROOT=/opt/anaconda/anaconda3 CONDA_SHLVL=0 CURL_CA_BUNDLE= PATH=/opt/anaconda/anaconda3/bin:/opt/anaconda/anaconda3/condabin:/usr/loca l/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/mpang/.local/bin:/home/ mpang/bin REQUESTS_CA_BUNDLE= SSL_CERT_FILE=

 active environment : None
        shell level : 0
   user config file : /home/mpang/.condarc

populated config files : /home/mpang/.condarc conda version : 4.12.0 conda-build version : 3.21.4 python version : 3.8.8.final.0 virtual packages : linux=3.10.0=0 glibc=2.17=0 unix=0=0 archspec=1=x86_64 base environment : /opt/anaconda/anaconda3 (read only) conda av data dir : /opt/anaconda/anaconda3/etc/conda conda av metadata url : None channel URLs : https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /opt/anaconda/anaconda3/pkgs /home/mpang/.conda/pkgs envs directories : /home/mpang/.conda/envs /opt/anaconda/anaconda3/envs platform : linux-64 user-agent : conda/4.12.0 requests/2.25.1 CPython/3.8.8 Linux/3.10.0-1160.53.1.el7.x86_64 centos/7.9.2009 glibc/2.17 UID:GID : 1011:1012 netrc file : None offline mode : False

An unexpected error has occurred. Conda has prepared the above report.

If submitted, this report will be used by core maintainers to improve future releases of conda. Would you like conda to send this report to the core maintainers?

bvaldebenitom / SpatialTE

Error when creating environment using conda env create -f SpatialTE.yml #2

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<