cBioPortal rfc80-team issues

cBioPortal / rfc80-team

repository to hold issues for the rfc80 development / deployment team

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Make sure to handle edge cases for numerical clinical data filter

#32 onursumer opened 1 week ago
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For sample-list-counts service, try using sample_list_columnstore table to avoid joins

#31 alisman opened 1 week ago
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Mutated-genes endpoint errors when we filter by patient level clinical data

#30 alisman opened 1 week ago
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Make sure we aren't filtering by study and sample list redundantly inside of sub filters

#29 alisman opened 2 weeks ago
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Molecular profile count service query can be simplified using genomic_event_derived

#28 alisman opened 2 weeks ago
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Add MutationDataFilters

#27 haynescd opened 2 weeks ago
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Finish GeneFilter Implementation

#26 haynescd opened 2 weeks ago
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Implement CNA Endpoint / Filter

#25 haynescd opened 2 weeks ago
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Make sure we properly normalizing all NA, na, null, etc. types

#24 alisman opened 2 weeks ago
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Make sure that "conflicting" patient/sample clinical attributes are properly handled

#23 alisman opened 2 weeks ago
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Update to return correct number of Profiled Cases when mutation is found in a gene that isn't attached to a gene_panel

#22 haynescd opened 1 month ago
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Matching Gene Panel discrepency from Legacy Implementation

#21 haynescd opened 1 month ago
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Number of Profiled Cases count is off from legacy mutated-genes endpoint

#20 haynescd opened 1 month ago
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Create a secondary sub domain for

#19 alisman closed 4 weeks ago
1
Reimplement custom-data endpoint

#18 alisman opened 1 month ago
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Implement mutation type count endpoint

#17 inodb opened 1 month ago
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Move NA count logic to SQL

#16 onursumer opened 1 month ago
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Create a new MySQL RDS node with a recent backup of genie public data and port to Clickhouse

#15 alisman closed 1 month ago
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Update mutated-genes endpoint and implement AlterationFilter

#14 haynescd opened 1 month ago
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internal docker based clickhouse server is available

#13 sheridancbio closed 1 month ago
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Re-implement molecular-profile-sample-counts endpoint

#12 alisman opened 1 month ago
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Validate current clickhouse query

#11 alisman opened 1 month ago
1
Re-implement clinical-data-counts

#10 alisman opened 1 month ago
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Re-implement annotation count services

#9 alisman opened 1 month ago
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Re-implement sample-list-counts

#8 alisman opened 1 month ago
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Create view that demonstrates exploded data (delimited cell -> rows)

#7 alisman closed 3 weeks ago
1
Re-implement genomic-data-counts endpoint

#6 alisman opened 1 month ago
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Re-implement clinical-data-bin-counts endpoint

#5 alisman opened 1 month ago
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Profile the clinical data binning aggregation step

#4 alisman closed 1 month ago
2
SQL-to-clickhouse data transfer tool is available with docs

#3 sheridancbio opened 1 month ago
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Clickhouse-only configuration has been developed and benchmarked

#2 sheridancbio opened 1 month ago
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rfc80 document approved by steering committee

#1 sheridancbio closed 1 month ago
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