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cBioPortal
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rfc80-team
repository to hold issues for the rfc80 development / deployment team
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Copy of Run api tests against localdb instance connected with genie/TCGA databases
#48
alisman
closed
2 months ago
0
Run api tests against localdb instance connected with genie/TCGA databases
#47
alisman
closed
2 months ago
1
Remaining normalization issue with TRUE|true values
#46
alisman
closed
3 months ago
2
Filtering on NA clinical data value fails validation (always returns no results)
#45
alisman
closed
2 months ago
0
Range filtering on some clinical data causing invalid result
#44
alisman
closed
2 months ago
2
Mutation data count service not returning "Not Profiled" count
#43
alisman
closed
2 months ago
0
SQL error when setting genomic-data-bin-counts filter
#42
alisman
closed
2 months ago
2
Extra samples in CH implementation when filtering on mutated genes with OR clause
#41
alisman
closed
2 months ago
0
Normalization issue on clinical-data-counts service
#40
alisman
closed
3 months ago
2
Overall survival chart is missing NA counts in CH implementation
#39
alisman
closed
2 months ago
2
Slight mutation count discrepancy on genie
#38
alisman
closed
2 months ago
0
CNAGenes endpoint returning reversed sign on CNA alteration type
#37
alisman
closed
3 months ago
2
Clickhouse endpoint discrepancies
#36
alisman
opened
3 months ago
0
Discrepancy with clin data range filter set
#35
alisman
closed
2 months ago
0
Add unit tests for clinical data bin counts endpoint
#34
onursumer
closed
3 months ago
1
Implement genomic-data-counts endpoint in clickhouse
#33
alisman
closed
1 month ago
1
Make sure to handle edge cases for numerical clinical data filter
#32
onursumer
closed
2 months ago
0
For sample-list-counts service, try using sample_list_columnstore table to avoid joins
#31
alisman
closed
2 months ago
0
Mutated-genes endpoint errors when we filter by patient level clinical data
#30
alisman
closed
2 months ago
0
Make sure we aren't filtering by study and sample list redundantly inside of sub filters
#29
alisman
closed
2 months ago
0
Molecular profile count service query can be simplified using genomic_event_derived
#28
alisman
closed
2 months ago
0
Add MutationDataFilters
#27
haynescd
closed
2 months ago
0
Finish GeneFilter Implementation
#26
haynescd
closed
2 months ago
1
Implement CNA Endpoint / Filter
#25
haynescd
closed
3 months ago
0
Make sure we properly normalizing all NA, na, null, etc. types
#24
alisman
closed
3 months ago
0
Make sure that "conflicting" patient/sample clinical attributes are properly handled
#23
alisman
opened
5 months ago
0
Update to return correct number of Profiled Cases when mutation is found in a gene that isn't attached to a gene_panel
#22
haynescd
opened
5 months ago
0
Matching Gene Panel discrepency from Legacy Implementation
#21
haynescd
opened
5 months ago
0
Number of Profiled Cases count is off from legacy mutated-genes endpoint
#20
haynescd
closed
3 months ago
1
Create a secondary sub domain for
#19
alisman
closed
5 months ago
1
Reimplement custom-data endpoint
#18
alisman
opened
6 months ago
0
Implement mutation type count endpoint
#17
inodb
closed
1 month ago
0
Move NA count logic to SQL
#16
onursumer
closed
3 months ago
1
Create a new MySQL RDS node with a recent backup of genie public data and port to Clickhouse
#15
alisman
closed
6 months ago
0
Update mutated-genes endpoint and implement AlterationFilter
#14
haynescd
opened
6 months ago
0
internal docker based clickhouse server is available
#13
sheridancbio
closed
6 months ago
0
Re-implement molecular-profile-sample-counts endpoint
#12
alisman
opened
6 months ago
0
Validate current clickhouse query
#11
alisman
closed
3 months ago
1
Re-implement clinical-data-counts
#10
alisman
opened
6 months ago
0
Re-implement annotation count services
#9
alisman
opened
6 months ago
1
Re-implement sample-list-counts
#8
alisman
opened
6 months ago
0
Create view that demonstrates exploded data (delimited cell -> rows)
#7
alisman
closed
5 months ago
1
Re-implement genomic-data-counts endpoint
#6
alisman
opened
6 months ago
0
Re-implement clinical-data-bin-counts endpoint
#5
alisman
opened
6 months ago
0
Profile the clinical data binning aggregation step
#4
alisman
closed
6 months ago
2
SQL-to-clickhouse data transfer tool is available with docs
#3
sheridancbio
opened
6 months ago
2
Clickhouse-only configuration has been developed and benchmarked
#2
sheridancbio
opened
6 months ago
0
rfc80 document approved by steering committee
#1
sheridancbio
closed
6 months ago
0