Author: Yikang Li.
Database: Globi
Contents:
notebook:
part1_globi_access.ipynb: Jupyter notebook for how to access the data; Basic data exploration.
part2_globi_exploration.ipynb: data exploration with new version of interactions.tsv
data:
interactions.tsv: the new version of interactions.tsv, with taxon paths expanded into separate name/id columns (e.g., sourceTaxonKingdomId, sourceTaxonKingdomName), this is not uploaded to GitHub due to the large size but should be in your local directory in order to run the codes.
r:
GloBi_exploration.md: Data exploration with R using 'rglobi'(.md version).
GloBi_exploration.Rmd: Data exploration with R using 'rglobi'(.Rmd version).