cailab-tamu scTenifoldKnk issues

cailab-tamu / scTenifoldKnk

R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.

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issues

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GSEA problem

#28 seekning opened 3 days ago
0
Very Low Numbers of Significant Genes for Knockouts

#27 sojichld opened 1 week ago
0
Guidance to set nc_nCells and nc_nComp parameters

#26 Rohit-Satyam opened 9 months ago
1
Systematic KO code

#25 ChantKatrjian opened 11 months ago
1
suggestion on filtering genes of interest

#24 Rohit-Satyam opened 11 months ago
2
Regarding Log2FC value

#23 lagom2728 opened 1 year ago
1
Applicability for KO of lncRNAs

#22 Prakrithi-P opened 1 year ago
0
The dims contain missing values?

#21 Siteng999 opened 1 year ago
2
Stuck at 0% - Calculating for hours

#20 mgr98 opened 1 year ago
0
Error for installing scTenifoldKnk

#19 Jingshu777 opened 1 year ago
0
Question: How to run scTenifoldKnk on one cluster

#18 abedkurdi opened 2 years ago
0
For RNA-seq data

#17 VikArz02 opened 2 years ago
1
Questions about running scTenifoldKnk

#16 abedkurdi closed 2 years ago
2
Data normalized or not?

#15 vfriver opened 2 years ago
3
Gene of interest not appearing knocked down.

#14 charlesgwellem opened 2 years ago
2
Using scTenifoldKnk for other organism than Human

#13 Rohit-Satyam closed 2 years ago
4
Error in dim(mat) <- new_modes : the dims contain missing values

#12 qotjrud3 opened 2 years ago
5
Installation error

#11 Eomesodermin closed 2 years ago
2
Before running scTenifoldNet to construct networks, could we please pre-allocate memory required for the rest steps.

#10 jamesjcai opened 2 years ago
1
remove unnecessary output network of KO

#9 jamesjcai opened 2 years ago
1
Error in `[.data.frame`(countMatrix, , selectedCells) : undefined columns selected

#8 marvelouscandy closed 2 years ago
4
answer to issue 15

#7 qianxu05172019 closed 2 years ago
0
distinguish between up- and down- regulated genes

#6 Leonrunning closed 3 years ago
2
subscript out of bounds

#5 Leonrunning closed 3 years ago
2
is it possible to speed up the scTenifoldKnk

#4 Leonrunning closed 3 years ago
2
gko

#3 Leonrunning closed 3 years ago
3
The result changes every time, is it normal??

#2 gdk43 closed 3 years ago
2
Am I doing correctly?

#1 dmsalsgh97 closed 3 years ago
1