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caitiecollins
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treeWAS
treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
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about the p-values
#28
zhaoxvwahaha
closed
5 years ago
0
how treeWAS transfer phenotype to "0" or "1"
#27
zhaoxvwahaha
closed
6 years ago
2
Installation error
#26
LeonardosMageiros
closed
6 years ago
9
Significant p-value same as minimum p-value?
#25
cizydorczyk
closed
6 years ago
2
Error in ptree(tree, data, retData = TRUE) :
#24
zhaoxvwahaha
closed
6 years ago
21
install error
#23
zhaoxvwahaha
closed
6 years ago
1
P-value significance threshold
#22
LuziaThea
closed
6 years ago
3
required loading packages manually
#21
acgerstein
closed
6 years ago
1
Set mem.lim = numeric error?
#20
cizydorczyk
closed
6 years ago
1
Memory limits, chunk size
#19
caitiecollins
closed
6 years ago
5
long vectors no supported yet
#18
SionBayliss
closed
5 years ago
1
Phylogenetic tree - bootstrap values
#17
VincentGreffe
closed
2 years ago
3
homoplasies
#16
plasmid02
closed
6 years ago
3
Dependency ape requires R>=3.2.0
#15
vaofford
closed
6 years ago
1
object treeWAS.out is missing when installing treeWAS
#14
BorisVSchmid
closed
6 years ago
3
missing prerequisite package "png"
#13
BorisVSchmid
closed
6 years ago
3
Error in sort.int just after "All findings:" result report.
#12
BorisVSchmid
closed
6 years ago
3
How does treeWAS perform the Bonferroni correction?
#11
cizydorczyk
closed
6 years ago
5
Error when running treeWAS with ClonalFrameML Input
#10
cizydorczyk
closed
6 years ago
5
Phenotypes: NAs, continuous vs. discrete reconstructions, continuous vs. rank
#9
VincentGreffe
closed
7 years ago
8
Problem using treeWAS with phylogenetic tree
#8
VincentGreffe
closed
7 years ago
6
Error in .Call
#7
Mishmash-su
closed
7 years ago
2
Trouble with trees
#6
d-j-e
closed
7 years ago
5
How does the tool calculate the p-value?
#5
Owen-haha
closed
7 years ago
2
Example in README gives "snps must be a binary matrix"
#4
khturner
closed
7 years ago
2
Make a release
#3
andersgs
closed
6 years ago
1
Add a license
#2
andersgs
closed
7 years ago
1
Installation error when installing with vignette
#1
andersgs
closed
7 years ago
3
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