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campbio
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celda
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
http://bioconductor.org/packages/celda
MIT License
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Adding Celda module-based analysis tutorial
#406
ykoga07
closed
2 months ago
0
Added findMarkersTree function and updated the example to work with SCE objects
#405
irzamsarfraz
closed
3 months ago
0
Updates to celda reports
#404
joshua-d-campbell
closed
6 months ago
0
Updates to CeldaCG_PlotResults rmd
#403
salzcamino
closed
6 months ago
0
Minor Bug Fixes
#402
salzcamino
closed
7 months ago
0
Bioc fixes
#401
joshua-d-campbell
closed
7 months ago
0
Error: package or namespace load failed for ‘celda’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘GenomeInfoDbData’
#400
zijunmeng
closed
10 months ago
1
Removed multipanelfigure
#399
joshua-d-campbell
closed
1 year ago
0
Release 3 18
#398
zhewa
closed
1 year ago
1
update bioc master (devel) branch
#397
zhewa
closed
1 year ago
0
Remove dependency to multipanelfigure. Use gridExtra.
#396
zhewa
closed
1 year ago
2
Installing on M1 Macbook fails
#395
kotr98
closed
10 months ago
7
Is it necessary to filter gene or cell filter needed after DecontX
#391
MISAKA-DaYu
closed
1 year ago
1
Disagreement in contamination estimations with/without raw data
#390
dlee598
closed
1 year ago
1
Fixed a bug dealing with factors and cleaned code for splitModule
#389
joshua-d-campbell
closed
1 year ago
0
Updating version to match Bioconductor
#388
joshua-d-campbell
closed
1 year ago
0
Updating version to match Bioconductor
#387
joshua-d-campbell
closed
1 year ago
0
High level of estimated contamination for same sample but different set of filtered cells
#384
dlee598
closed
1 year ago
1
Updated website and docs
#382
joshua-d-campbell
closed
2 years ago
0
Bug fixes for plotting and cluster factors
#381
joshua-d-campbell
closed
2 years ago
0
decontX not reproducible?
#377
trnguyenuka
closed
2 years ago
3
Decontx: Heuristic clustering or z parameter? How are the cluster labels specified with the z parameter affecting the decontamination?
#376
MartaSanchezCarbonell
closed
2 years ago
1
using decontx with filtered or raw matrix?
#374
dm8000
closed
2 years ago
1
Getting percentages of contamination
#371
sameehan2301
closed
2 years ago
1
different genes
#370
wbf520qcp
closed
2 years ago
1
decontX failure in all matrix types
#369
CMSimpson8
closed
2 years ago
2
Using DecontX
#367
barbarashih
closed
2 years ago
1
Unexpected behavior when subsetting on decontaminated counts
#364
jmodlis
closed
2 years ago
1
Example of decontX integration with Seurat, singleCellTK, and typo in vignette
#363
yuan-yin-truly
closed
2 years ago
0
cells with 100% contamination?
#362
plijnzaad
closed
2 years ago
3
crash: "The number of rows in 'eta' must be equal to the number of rows in 'counts'." when specifying a background argument
#361
plijnzaad
opened
2 years ago
10
decontX output not found
#360
hsriniva1104
closed
2 years ago
1
Fix the background input bug when input class is not SingleCellExperiment
#357
yuan-yin-truly
closed
2 years ago
0
Adding background batch
#356
yuan-yin-truly
closed
2 years ago
0
background argument is ignored
#355
jdekanter
closed
2 years ago
5
Threshold to filter contaminated cells
#353
supermegamio
closed
2 years ago
2
Algorithm stuck at last iteration in Estimating contamination
#352
ayeTown
closed
2 years ago
3
Error in fitTrendVar(fm, fv, ...)
#351
ayeTown
closed
2 years ago
3
Error in ‘reducedDim’ for UMAP
#349
karlaarz
closed
3 years ago
1
Speed up sparse matrix value assignment
#348
yuan-yin-truly
closed
3 years ago
0
Speed up sparse matrix assignment
#347
yuan-yin-truly
closed
3 years ago
1
"Unused argument background" error
#346
sjfleming
closed
3 years ago
3
use of decontXcounts in subseq
#344
Sa753
closed
3 years ago
1
RELEASE_3_13 version
#343
zhewa
closed
3 years ago
0
version bump
#342
zhewa
closed
3 years ago
0
fix CeldaCG_PlotResults.Rmd
#341
zhewa
closed
3 years ago
0
Devel
#340
zhewa
closed
3 years ago
0
show empty gene in moduleHeatmap
#339
zhewa
closed
3 years ago
0
add displayName to plotCeldaViolin, featureModuleTable. Fix bugs.
#338
zhewa
closed
3 years ago
1
update report.R
#337
zhewa
closed
3 years ago
0
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