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campbio
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scruff
Single Cell RNA-seq UMI Filtering Facilitator
http://bioconductor.org/packages/scruff/
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Release 3 9
#129
zhewa
closed
5 years ago
0
Error for wrong Cellranger barcode file
#128
joshua-d-campbell
closed
5 years ago
1
fix Bioconductor devel error
#127
zhewa
closed
5 years ago
2
version bump
#126
zhewa
closed
5 years ago
0
fix alignRsubread.R
#125
zhewa
closed
5 years ago
0
update version
#124
zhewa
closed
5 years ago
0
Release 3 9
#123
zhewa
closed
5 years ago
0
remove spaces
#122
zhewa
closed
5 years ago
0
Release 3 9
#121
zhewa
closed
5 years ago
0
update vignette to show how bamExample is generated
#120
zhewa
closed
5 years ago
1
Devel
#119
zhewa
closed
5 years ago
1
Devel
#118
zhewa
closed
5 years ago
1
apply lintr
#117
zhewa
closed
5 years ago
1
apply lintr
#116
zhewa
closed
5 years ago
4
Devel
#115
zhewa
closed
5 years ago
1
update README figures
#114
zhewa
closed
5 years ago
0
check GTF colnames. add GTF reading messages
#113
zhewa
closed
5 years ago
1
remove features are in .getGeneAnnotation
#112
zhewa
closed
5 years ago
0
Devel
#111
zhewa
closed
5 years ago
1
remove features arg in .getGeneAnnotation
#110
zhewa
closed
5 years ago
1
Release 3 8
#109
zhewa
closed
5 years ago
1
remove refGenome dependency. Hide Rsubread messages when verbose == FALSE
#108
zhewa
closed
5 years ago
1
Update bug reports URL to Bioconductor
#107
zhewa
closed
5 years ago
1
Potential open file limit problem with macOS or large 10X runs
#106
Shians
closed
5 years ago
1
update bamTenxqc doc. fix qcplots if condition bug
#105
zhewa
closed
5 years ago
1
fix qcplots if condition
#104
zhewa
closed
5 years ago
1
parallelize demultiplex on read level #100
#103
zhewa
closed
5 years ago
1
add collection of number of reads per umi in countUMI
#102
zhewa
closed
5 years ago
1
add simple UMI correction
#101
zhewa
closed
5 years ago
1
Parallelize demultiplex function on read level
#100
zhewa
closed
5 years ago
0
Disable automatic sorting of experiments in `qcplots`
#99
zhewa
closed
5 years ago
0
add ImmonoOncology biocViews. Bump version to 1.0.1
#98
zhewa
closed
5 years ago
2
add ImmunoOncology to biocViews. bump version
#97
zhewa
closed
5 years ago
1
remove tenxBamqcplot funciton. merged code to qcplots function. cleaner code
#96
zhewa
closed
5 years ago
1
version bump
#95
zhewa
closed
6 years ago
0
throw error if cell barcode input is not right
#94
zhewa
closed
6 years ago
1
demultiplex output is all put in undetermined
#93
LisanneL
closed
6 years ago
1
remove duplicated figure
#92
zhewa
closed
6 years ago
0
new plots. update README.md
#91
zhewa
closed
6 years ago
0
fix a bug where MT reads are not identified. add ERCC to rowData. Plot style change. Add minor log ticks
#90
zhewa
closed
6 years ago
1
fix conflict
#89
zhewa
closed
6 years ago
1
Add QC support for 10X BAM files
#88
zhewa
closed
6 years ago
0
update vignette. Add examples for tenxBamqc and tenxBamqcplot functions
#87
zhewa
closed
6 years ago
1
change function names. add examples. update documentation. minor bug fix
#86
zhewa
closed
6 years ago
1
change y axis labels. add minor log ticks
#85
zhewa
closed
6 years ago
1
plot10x function now works for all filtered, unfiltered, and merged d…
#84
zhewa
closed
6 years ago
0
bug fixes
#83
zhewa
closed
6 years ago
1
update tenxqc and plot10x functions. color points by cell barcode filtering. Output filtered only and both plots
#82
zhewa
closed
6 years ago
1
coerce to data.table for plot10x function
#81
zhewa
closed
6 years ago
1
fix warning on vector boolean check
#80
zhewa
closed
6 years ago
1
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