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campbio
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scruff
Single Cell RNA-seq UMI Filtering Facilitator
http://bioconductor.org/packages/scruff/
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add support plotting QC metrics for 10x bam files using tenxqc and plot 10x functions
#79
zhewa
closed
6 years ago
1
minor fixes. update doc
#78
zhewa
closed
6 years ago
1
Devel 1.1.0
#77
zhewa
closed
6 years ago
1
First release. Update version to 1.0.0. Update travis integration. Add
#76
zhewa
closed
6 years ago
1
version bump
#75
zhewa
closed
6 years ago
0
update doc
#74
zhewa
closed
6 years ago
0
version bump
#73
zhewa
closed
6 years ago
0
update sceExample.rda fix countUMI example cellPerWell
#72
zhewa
closed
6 years ago
0
version bump
#71
zhewa
closed
6 years ago
0
Export QC metrics table as seperate file. sce object fix. email typo
#70
zhewa
closed
6 years ago
0
fixed a bug where count assay of sce objects is DataFrame instead of matrix
#69
zhewa
closed
6 years ago
0
version bump
#68
zhewa
closed
6 years ago
0
cores = 4 in vignette
#67
zhewa
closed
6 years ago
0
fix plyr loading conflict, version bump
#66
zhewa
closed
6 years ago
0
do not run alignRsubread example. Minor fix
#65
zhewa
closed
6 years ago
0
reformat codes, update vignette
#64
zhewa
closed
6 years ago
0
Use BiocParallel for parallelization. Code reformat
#63
zhewa
closed
6 years ago
0
add date in DESCRIPTION
#62
zhewa
closed
6 years ago
0
increase core number for examples and vignette
#61
zhewa
closed
6 years ago
0
LICENSE update vignette
#60
zhewa
closed
6 years ago
0
DESCRIPTION add authors and maintainer. sample -> experiment in annotation table
#59
zhewa
closed
6 years ago
0
.BBSoptions CHECKprepend.win: set _R_CHECK_FORCE_SUGGESTS_=0&&
#58
zhewa
closed
6 years ago
0
fixed a bug where rowData of sce object does not match count matrix g…
#57
zhewa
closed
6 years ago
0
try again to see if error persists on Bioc build systems
#56
zhewa
closed
6 years ago
0
Fix Rsubread Windows error
#55
zhewa
closed
6 years ago
0
lazyData: true
#54
zhewa
closed
6 years ago
0
version bump to 0.99.10
#53
zhewa
closed
6 years ago
0
cores = 1 in vignette
#52
zhewa
closed
6 years ago
0
version bump. add vignette pdf
#51
zhewa
closed
6 years ago
0
add \dontrun{} to some examples. version bump
#50
zhewa
closed
6 years ago
0
version bump 0.99.7
#49
zhewa
closed
6 years ago
0
Fix function loading duplication errors. R>= 3.5.0
#48
zhewa
closed
6 years ago
0
version bump
#47
zhewa
closed
6 years ago
0
Save sce object. Default Rsubread alignment unique = FALSE. Cleaner vignette.
#46
zhewa
closed
6 years ago
0
Use external data (inst/extdata). Remove fastq R objects
#45
zhewa
closed
6 years ago
0
increment version to 0.99.2
#44
zhewa
closed
6 years ago
0
Major updates. SingleCellExperiment support. Vignette update.
#43
zhewa
closed
6 years ago
0
Camel case functions and variables. Fixed "scruff" function. Update vignette.
#42
zhewa
closed
6 years ago
0
Multimapper version 0.1.0
#41
zhewa
closed
6 years ago
0
fix count bug. Now consistent with CEL-seq pipeline
#40
zhewa
closed
6 years ago
0
update vignette. optimize stepping function
#39
zhewa
closed
6 years ago
0
gview function. Visualize genes on the genome
#38
zhewa
closed
6 years ago
0
clean up stepping function. Document theme_publication
#37
zhewa
closed
6 years ago
0
fixed a bug where demultiplexed reads are overwritten
#36
zhewa
closed
6 years ago
0
modify stepping function
#35
JunmingH
closed
6 years ago
0
minor modification
#34
zhewa
closed
6 years ago
0
add property to install inner package automatocally
#33
JunmingH
closed
6 years ago
0
minor optimization of demultiplex barcode correction, steppting funct…
#32
zhewa
closed
6 years ago
0
Add vandenBrink data as example data. Fix scruff function
#31
zhewa
closed
6 years ago
0
vignette pdf -> html
#30
zhewa
closed
6 years ago
0
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