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MeRIPseqPipe
MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
MIT License
31
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18
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Avoid hisat2 index error when BaseName.ss exist.
#21
yduanBioinfo
opened
4 months ago
1
Parameter hisat2_index do not work
#20
yduanBioinfo
closed
4 months ago
1
DSL error DSL1 is no longer supported — Update your script to DSL2, or use Nextflow 22.10.x or earlier
#19
mathavanpu
opened
7 months ago
15
Designfile definitions question
#18
michauhl
closed
9 months ago
2
Error executing process > 'makeBED12 (gtf2bed12)'
#17
QiyaoWu90
closed
9 months ago
0
Can this tool be used for rip-seq analysis?
#16
slbai01
opened
1 year ago
0
pipeline error at PeaksMotifReport and diffm6APeak steps
#15
karenbobier
closed
7 months ago
0
MeRIPseqPipe running in docker was too slow.
#14
jxshi
closed
1 year ago
4
running with singularity
#13
Mrxun-JN
opened
1 year ago
0
/bin/bash: .command.run: No such file or directory
#12
wangyanmin123
closed
1 year ago
2
Operator into has been deprecated -- it's not available in DSL2 syntax
#11
matarina
closed
1 year ago
1
how to set the -p task.cpus in parameters
#10
shangguandong1996
closed
1 year ago
1
MACS2 -g parameter
#9
shangguandong1996
closed
2 years ago
2
What is corresponding file to the Volcano Plot
#8
mick42-star
closed
1 year ago
2
Is picard/MarkDuplicates necessary before running peak calling?
#7
PengNi
closed
1 year ago
2
running MeRIPseqPipe (macs2 or other tools) without input/control datasets
#6
PengNi
closed
2 years ago
4
errors with meripsqpipe
#5
mick42-star
closed
2 years ago
2
touch: cannot touch '.command.trace': Permission denied
#4
ghost
closed
2 years ago
15
Remaining mentions of nf-core
#3
ewels
closed
2 years ago
5
add citation
#2
juneb4869
closed
2 years ago
0
Update README.md
#1
likelet
closed
2 years ago
0