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cancervariants
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fusor
Data classes and constructor tools supporting the VICC Gene Fusion Curation project
https://fusor.readthedocs.io/
MIT License
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build: use pyproject.toml to set build configs
#139
jsstevenson
closed
8 months ago
0
style: use ruff for formatting
#138
jsstevenson
closed
8 months ago
0
Use `ruff` for formatting
#137
jsstevenson
closed
8 months ago
0
Consolidate configs to `pyproject.toml`
#136
jsstevenson
closed
6 months ago
0
build!: upgrade to pydantic v2
#135
katiestahl
closed
8 months ago
5
update cool-seq-tool version
#134
katiestahl
closed
2 months ago
1
cicd: update release.yml (publish python distribution to pypi)
#133
korikuzma
closed
12 months ago
2
Use core gene model from VRS 2.x, update to Pydantic v2
#132
jsstevenson
closed
3 months ago
4
feat: relax requirements on minimum information model
#131
katiestahl
closed
1 year ago
0
Represent fusions where one or more gene partners cannot be normalized
#130
jarbesfeld
opened
1 year ago
0
feat: relax requirements on minimum information model components to g…
#129
katiestahl
closed
1 year ago
0
use mock data for tests
#128
katiestahl
closed
2 months ago
3
relax requirements of minimum information model components
#127
katiestahl
closed
1 year ago
1
Draft FUSOR Translator Class
#126
jarbesfeld
opened
1 year ago
1
fix: catch alternate gene descriptor structure
#125
jsstevenson
closed
1 year ago
0
Double check/improve documentation
#124
jsstevenson
closed
3 months ago
1
feat: validate multi gene requirement
#123
jsstevenson
closed
1 year ago
0
Validate the "no ITD/chimeric transcript" requirement
#122
jsstevenson
opened
1 year ago
0
cicd: update style checks and test coverage dependencies
#121
jsstevenson
closed
1 year ago
0
fix: order of ALK fusion
#120
katiestahl
closed
1 year ago
1
Update ordering of ALK fusion
#119
jsstevenson
closed
1 year ago
0
Staging
#118
jsstevenson
closed
1 year ago
0
build: update cool-seq-tool dependency
#117
jsstevenson
closed
1 year ago
0
chore: update license
#116
jsstevenson
closed
1 year ago
0
perf: reuse gene normalizer instance
#115
jsstevenson
closed
1 year ago
0
fix: remove identifier prefixes from nomenclature
#114
jsstevenson
closed
1 year ago
1
Concise mode for nomenclature generation
#113
jsstevenson
opened
1 year ago
1
identifiers in nomenclature should not be CURIEs
#112
jsstevenson
closed
1 year ago
0
chore: increment version number
#111
jsstevenson
closed
1 year ago
0
build: update dependencies to support latest gene norm release (#108)
#110
jsstevenson
closed
1 year ago
0
style: use Ruff for linting
#109
jsstevenson
closed
1 year ago
0
build: update dependencies to support latest gene norm release
#108
jsstevenson
closed
1 year ago
0
Staging
#107
katiestahl
closed
1 year ago
0
Staging
#106
korikuzma
closed
1 year ago
0
build!: pin dependency versions + update readme
#105
korikuzma
closed
1 year ago
0
Update gene + cool-seq-tool versions
#104
korikuzma
closed
1 year ago
2
ci: bump action versions
#103
jsstevenson
closed
1 year ago
0
updating demo data
#102
katiestahl
closed
1 year ago
0
TPM3::PDGFRB segment junction demo data - change start/end exons
#101
katiestahl
closed
1 year ago
0
Staging
#100
jsstevenson
closed
2 years ago
0
feat: add inferred nomenclature
#99
jsstevenson
closed
2 years ago
0
fix: misc nomenclature bugs
#98
jsstevenson
closed
2 years ago
0
Add three-partner fusion example
#97
jsstevenson
closed
3 months ago
1
Add inferred fusion nomenclature
#96
jsstevenson
closed
2 years ago
1
Use latest VRS version
#95
jsstevenson
closed
2 months ago
6
feat: end-of-june manuscript updates
#94
jsstevenson
closed
2 years ago
0
Given nomenclature string, generate fusion
#93
jsstevenson
closed
2 years ago
1
Staging
#92
korikuzma
closed
2 years ago
0
fix: junction nomenclature to remove additional _
#91
korikuzma
closed
2 years ago
0
Fix Junction Components Nomenclature
#90
korikuzma
closed
2 years ago
1
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