cancervariants variation-normalization issues

cancervariants / variation-normalization

Services and guidelines for normalizing variants

https://normalize.cancervariants.org/variation/

MIT License

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issues

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feat: return MANE gene(s) in normalize endpoint for genomic queries

#576 korikuzma closed 3 months ago
0
build: pin cool-seq-tool~=0.6.0

#575 korikuzma closed 3 months ago
0
Docker Changes

#574 rajatkapoordfci opened 3 months ago
1
docs: update vrs versioning

#573 korikuzma closed 3 months ago
0
docs: update vrs versioning

#572 korikuzma closed 3 months ago
0
fix: update ga4gh.vrs + add back response_model configs for FastAPI

#571 korikuzma closed 3 months ago
0
feat!: add `sequence` to `SequenceLocation`

#570 korikuzma closed 3 months ago
0
cicd: allow missing credentials in aws creds detection

#569 jsstevenson closed 3 months ago
0
chore: remove unused files

#568 korikuzma closed 3 months ago
0
style: ruff format

#567 korikuzma closed 3 months ago
0
fix: TypeError for params that accept union of enums

#566 korikuzma closed 3 months ago
0
fix: __version__ imports

#565 korikuzma closed 3 months ago
1
chore: update ebextensions for downloading latest seqrepo instance

#564 korikuzma closed 3 months ago
2
fix(cicd): add reference to stalebot

#563 korikuzma closed 3 months ago
2
docs: update seqrepo version to 2024-02-20

#562 korikuzma closed 3 months ago
0
build!: update ga4gh.vrs, cool-seq-tool, + gene-normalizer

#561 korikuzma closed 3 months ago
0
cicd: update precommit dependency in pipfile

#560 jsstevenson closed 3 months ago
0
feat: enable more precise logging configuration

#559 jsstevenson closed 3 months ago
0
cicd: update precommit

#558 jsstevenson closed 3 months ago
0
style: update ruff

#557 jsstevenson closed 3 months ago
1
cicd: update workflows/templates from template repo

#556 jsstevenson closed 3 months ago
0
build: update requirements and build system

#555 jsstevenson closed 3 months ago
0
issue in normalizer behavior for transcript sequence location

#554 ahwagner closed 4 months ago
1
Docker vn

#553 rajatkapoordfci opened 6 months ago
6
Add back `vrs_ref_allele_seq` to response

#552 korikuzma closed 3 months ago
2
return gene context info for genomic queries

#551 katiestahl opened 7 months ago
8
build: reorganize build metadata (#549)

#550 jsstevenson closed 7 months ago
0
build: reorganize build metadata

#549 jsstevenson closed 7 months ago
0
docs: readme glow-up

#548 jsstevenson closed 7 months ago
1
chore: update license

#547 jsstevenson closed 7 months ago
0
cicd: require priority label on PRs

#546 jsstevenson closed 7 months ago
0
cicd: require priority label on PRs

#545 jsstevenson closed 7 months ago
0
cicd: test install on 3.12

#544 jsstevenson closed 7 months ago
0
add back missing models to openapi.json

#543 korikuzma closed 3 months ago
2
build!: udpate ga4gh.vrs version

#542 korikuzma closed 7 months ago
1
Update to `ga4gh.vrs[extras]` to `2.0.0a5`

#541 korikuzma closed 7 months ago
0
test: only check vrs ids on certain tests

#540 korikuzma closed 8 months ago
0
build: pin ga4gh.vrs dependency

#539 korikuzma closed 8 months ago
0
Update SeqRepo collection to `2024-02-20`

#538 korikuzma closed 3 months ago
2
cicd: fix elastic beanstalk deployment

#537 korikuzma closed 8 months ago
0
fix: handle cases where gene_context is not found

#536 korikuzma closed 8 months ago
0
gnomad_vcf_to_protein handle cases where no gene is found

#535 korikuzma closed 8 months ago
0
pytest-asyncio DeprecationWarning for event_loop

#534 korikuzma opened 9 months ago
0
build: modernize build configs

#533 korikuzma closed 8 months ago
2
style: replace black with ruff

#532 korikuzma closed 8 months ago
0
Modernize build configs

#531 korikuzma closed 8 months ago
0
Remove black and update ruff config

#530 korikuzma closed 8 months ago
0
feat!: add more support for queries in gnomad_vcf_to_protein

#529 korikuzma closed 9 months ago
8
build!: update cool-seq-tool + ga4gh.vrs versions

#528 korikuzma closed 9 months ago
5
Reduce the number of tests

#527 korikuzma opened 10 months ago
0