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cancervariants
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variation-normalization
Services and guidelines for normalizing variants
https://normalize.cancervariants.org/variation/
MIT License
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Update metaschema to use VRS 2.0-alpha changes
#476
korikuzma
closed
1 year ago
6
Replace flake8 with ruff
#475
jsstevenson
closed
1 year ago
6
refactor!: clean up app
#474
korikuzma
closed
1 year ago
5
No gene symbol found for `ENST00000277541.6`
#473
korikuzma
opened
1 year ago
0
cicd: update sc_product_id
#472
korikuzma
closed
1 year ago
0
Add more tests for HGVS Ensembl expressions
#471
korikuzma
opened
1 year ago
0
Update codebuild sc product id
#470
korikuzma
closed
1 year ago
0
fix: allow comparator to be set in start/end values
#469
korikuzma
closed
1 year ago
0
fix: Copy Number Count copies should be Number or Indef/Def Range
#468
korikuzma
closed
1 year ago
0
Better error and warning handling
#467
korikuzma
opened
1 year ago
1
Add FAQ Docs
#466
korikuzma
opened
1 year ago
0
Parsed to CNV endpoints do not cover all ambiguous ranges
#465
korikuzma
opened
1 year ago
0
Add support for NG expressions
#464
korikuzma
opened
1 year ago
0
Support NCBI36 / hg18
#463
korikuzma
opened
1 year ago
0
build: update ga4gh.vrsatile.pydantic version
#462
korikuzma
closed
1 year ago
0
build: update ga4gh.vrsatile.pydantic version
#461
korikuzma
closed
1 year ago
0
refactor!: parsed to copy number should accept request body (metaschema)
#460
korikuzma
closed
1 year ago
0
feat: add do_liftover param in parsed to copy number endpoints (metaschema)
#459
korikuzma
closed
1 year ago
1
parsed to copy number should accept request body rather than query params
#458
korikuzma
closed
1 year ago
2
hgvs_to_copy_number_count should support 0 baseline_copies
#457
theferrit32
opened
1 year ago
1
chore: update elastic beanstalk commands
#456
korikuzma
closed
1 year ago
0
fix!: `/parsed_to_cn_var` should accept number, definite range, and indefinite range
#455
korikuzma
closed
1 year ago
0
Remove /to_canonical_variation endpoint
#454
korikuzma
closed
1 year ago
2
feat: add parsed to copy number change endpoint (metaschema)
#453
korikuzma
closed
1 year ago
0
ci: add GH action for installing deps + remove requirements (metaschema)
#452
korikuzma
closed
1 year ago
0
parsed to copy number endpoints should allow curie or gene as subject
#451
korikuzma
opened
1 year ago
0
parsed to copy number endpoints should have a do_liftover param
#450
korikuzma
closed
1 year ago
1
to_vrs returns valid results when hgvs position is greater than ref sequence length
#449
larrybabb
opened
1 year ago
2
Update FastAPI descriptions
#448
korikuzma
opened
1 year ago
0
gnomad_vcf_to_protein gives incorrect VRS variation
#447
korikuzma
opened
1 year ago
0
revert: analysis: civic + moa variant analysis (#439)
#446
korikuzma
closed
1 year ago
0
Remove analysis notebooks
#445
korikuzma
closed
1 year ago
1
Create parsed_to_cx_var endpoint
#444
korikuzma
closed
1 year ago
3
/parsed_to_cn_var should accept number, indefinite range, or definite range
#443
korikuzma
opened
1 year ago
2
ci: add GH action for installing deps + remove requirements
#442
korikuzma
closed
1 year ago
0
Add flake8-nb for analysis work
#441
korikuzma
closed
1 year ago
2
refactor: cleanup civic + moa evidence/assertion analysis notebook
#440
korikuzma
closed
1 year ago
1
analysis: civic + moa variant analysis
#439
korikuzma
closed
1 year ago
6
server error on /to_vrs and /normalize for "NC_000010.11-87925523-C-G"
#438
jsstevenson
opened
1 year ago
1
build(deps-dev): bump tornado from 6.3.1 to 6.3.2
#437
dependabot[bot]
closed
1 year ago
1
Add more tests for incorrect input
#436
korikuzma
opened
1 year ago
0
build(deps): bump requests from 2.30.0 to 2.31.0
#435
dependabot[bot]
closed
1 year ago
1
Add support for HGVS insertions of form {pos}_{pos}ins{pos}_{pos}
#434
korikuzma
opened
1 year ago
0
build(deps): bump starlette from 0.26.1 to 0.27.0
#433
dependabot[bot]
closed
1 year ago
1
GENIE Analysis
#432
korikuzma
closed
1 year ago
10
GENIE Analysis
#431
korikuzma
closed
1 year ago
1
refactor: create / update / remove enums in schemas
#430
korikuzma
closed
1 year ago
0
Some fields can be inherited from another class (but this requires renaming of fields to a more generalized name rather than specific to the class itself)
#429
korikuzma
closed
1 year ago
1
Some fields like `so_id` and `molecule_context` are in Tokenizer schemas, but should be moved to Classification schemas. For `molecule_context` we should use ga4gh.vrsatile.pydantic
#428
korikuzma
closed
1 year ago
1
Clean up imports
#427
korikuzma
closed
1 year ago
1
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