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candYgene
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pbg-ld
Linked Data Platform for Plant Breeding & Genomics
https://research-software.nl/software/pbg-ld
Apache License 2.0
2
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5
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Failed to connect to host
#51
mbeavitt
closed
11 months ago
3
Fix chromosome labels
#50
arnikz
closed
5 years ago
1
Run Docker services on subdomains
#49
arnikz
opened
5 years ago
0
Rename Docker image
#48
arnikz
closed
1 year ago
1
Update chromosome labels
#47
arnikz
closed
5 years ago
1
Update README
#46
arnikz
opened
5 years ago
0
Add genome graph of the potato cultivar M6
#45
arnikz
closed
5 years ago
1
Use permanent identifiers in production
#44
arnikz
opened
5 years ago
0
Add updated Jupyter Notebooks
#43
arnikz
closed
1 year ago
1
Use Makefile to fetch remote RDF data
#42
arnikz
opened
5 years ago
0
Add DC terms identifiers for chromosomes
#41
arnikz
opened
5 years ago
0
Change graph IRI
#40
arnikz
closed
5 years ago
0
Add tests for WebAPI
#39
arnikz
opened
5 years ago
1
Link genes to JBrowse
#38
arnikz
opened
5 years ago
0
Error The estimated execution time exceeds the limit of 400 (sec).
#37
gurnoor1990
closed
5 years ago
2
Update user documentation
#36
arnikz
opened
5 years ago
0
Enable additional annotation tracks in JBrowse
#35
arnikz
closed
5 years ago
0
Some flanking markers require additional validation & post-processing
#34
arnikz
closed
5 years ago
3
FCT browser link is not resolvable is the new commit
#33
gurnoor1990
closed
5 years ago
0
Create & orchestrate Docker images
#32
arnikz
closed
5 years ago
1
All example queries with the following graphs are not running
#31
gurnoor1990
closed
5 years ago
3
Create Ansible playbook
#30
arnikz
closed
5 years ago
0
Expose pbg-ld data through Web API
#29
arnikz
closed
5 years ago
0
Deploy pbg-ld to HPC Cloud
#28
arnikz
closed
5 years ago
0
JBrowse URLs of QTLs are not formatted correctly
#27
arnikz
closed
5 years ago
0
Missing triples linking potato genes and QTLs
#26
arnikz
closed
5 years ago
1
Improve tests on RDF graphs
#25
arnikz
opened
5 years ago
0
Check Query for Uniprot
#24
gurnoor1990
closed
5 years ago
1
No triples for the graph http://www.uniprot.org/proteomes/Solanum_tuberosum
#23
gurnoor1990
closed
5 years ago
2
Example Query 4 not working
#22
gurnoor1990
closed
5 years ago
3
Upload new QTL graphs
#21
gurnoor1990
closed
5 years ago
3
QTLs not linked to SGN's genome browser
#20
arnikz
closed
6 years ago
0
Normalize chromosome URIs in SGN graphs
#19
arnikz
closed
5 years ago
1
Provide a machine-readable list of source datasets used
#18
arnikz
opened
6 years ago
0
Add RDF graphs for potato
#17
arnikz
closed
6 years ago
0
Broken links to PMC articles
#16
arnikz
closed
6 years ago
0
added citation data and zenodo metadata
#15
jspaaks
closed
6 years ago
0
Add queries to check the resulting RDF graphs
#14
arnikz
opened
6 years ago
0
Fix download URL of UniProt Core RDF.
#13
arnikz
closed
6 years ago
0
get-rdf.sh receives html for uniprot_core
#12
matthijsbrouwer
closed
6 years ago
1
Example Query 7 is not working
#11
gurnoor1990
closed
6 years ago
6
Make a distinction between peak and flanking markers
#10
arnikz
opened
6 years ago
0
Centralize config of graph URIs
#9
arnikz
opened
6 years ago
0
Undo changes in the RDF graphs
#8
arnikz
opened
6 years ago
0
FIX download URL of the UniProt Core RDF
#7
arnikz
closed
6 years ago
1
Generate RDF graphs for ITAG3.2 tomato genome annotations
#6
arnikz
opened
6 years ago
0
Add SGN gene to InterPro/GO term mappings for tomato
#5
arnikz
opened
6 years ago
0
Jspaaks citationcff
#4
jspaaks
closed
6 years ago
0
Jspaaks citationcff
#3
jspaaks
closed
6 years ago
0
Issue with Emsembl Plants release-33
#2
c-martinez
closed
7 years ago
4
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