caporaso-lab student-microbiome-project issues

caporaso-lab / student-microbiome-project

Central repository for data and analysis tools for the StudentMicrobiomeProject.

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issues

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Update stats results

#37 jairideout closed 11 years ago
1
Beta div

#36 johnchase closed 11 years ago
1
updated to include beta diversity results to include university and personal-id

#35 johnchase closed 11 years ago
2
disturbance shifts versus inter-individual differences

#34 gregcaporaso opened 11 years ago
0
Highlight intrapersonal variation

#33 floresg opened 11 years ago
2
Added PCoA plots colored by individual on a per-body-site basis.

#32 jairideout closed 11 years ago
1
Vector Analysis

#31 ElDeveloper opened 11 years ago
1
add median per-individual unifrac distance to mapping file

#30 gregcaporaso opened 11 years ago
0
do shifted post-disturbance communities look functionally similar to pre-disturbance communities

#29 gregcaporaso opened 11 years ago
0
is alpha diversity correlated with BMI?

#28 gregcaporaso opened 11 years ago
1
are menstruation-associated community shifts the same across and within individuals?

#27 gregcaporaso opened 11 years ago
2
Latest changes to disturbance mapping script.

#26 jairideout closed 11 years ago
0
What is the relationship between diversity and stability?

#25 floresg closed 11 years ago
3
Check for discrimination via random forest by university

#24 antgonza opened 11 years ago
9
Disturbance Mapping

#23 floresg closed 11 years ago
1
Email address for Delivery system etc.

#22 floresg closed 11 years ago
1
review mapping of disturbance week numbers

#21 gregcaporaso closed 11 years ago
5
resolve issue with sample G10023

#20 gregcaporaso closed 11 years ago
2
Positive Control Analysis

#19 floresg opened 11 years ago
0
decide on timeseries filtering strategy

#18 gregcaporaso closed 11 years ago
34
Added script to map Dan's disturbance data

#17 jairideout closed 11 years ago
2
Do reported disturbances in weekly survey show up in unweighted unifrac over time?

#16 DDomogala3 opened 12 years ago
18
Enterotypes - do individuals move between enterotypes?

#15 floresg closed 11 years ago
1
Trajectory clustering

#14 ElDeveloper closed 11 years ago
16
For each body habitat, how does between individual distance change as we compare more samples?

#13 floresg closed 11 years ago
9
review all issues to figure out what can and cannot be done in QIIME

#12 gregcaporaso closed 11 years ago
0
Closed Reference OTU Picking - Jon Leff

#11 floresg closed 12 years ago
3
Are communities sampled closer in time more or less similar than those sampled further apart in time (time distance decay)? Other relationships with time and sampling (mantel tests of distance and time matrices)?

#10 floresg closed 11 years ago
2
What are the effects of specific disturbance events on the stability of the human microbiome?

#9 floresg closed 11 years ago
18
Are individuals that reported having atopic diseases (allergies, asthma, eczema, etc) more or less stable than those that did not? Diversity higher or lower?

#8 floresg closed 11 years ago
1
Gamma diversity – accumulation curves through time.

#7 floresg opened 12 years ago
2
Are variations in one body habitat predictable across other body habitats for each individual (synchronicity)?

#6 floresg closed 11 years ago
3
Are the regional OTU level differences?

#5 floresg opened 12 years ago
1
Are certain taxa (phyla – family?, gram-positives vs. gram negatives) more or less variable than others?

#4 floresg opened 12 years ago
1
Are individuals always more similar to themselves through time for a given body habitat than they are to other individuals?

#3 floresg opened 12 years ago
10
Which body habitats are most/least variable through time?

#2 floresg opened 12 years ago
20
OTU filtering process

#1 floresg closed 11 years ago
33