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caracal-pipeline / caracal

Containerized Automated Radio Astronomy Calibration (CARACal) pipeline
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3C273 as primary calibrator #1563

Closed sourabhpaul closed 4 months ago

sourabhpaul commented 5 months ago

Hi,

I am trying to calibrate some data which has 3C273 as both primary and secondary calibrator. I found a similar issue and as per the suggestions posted there I installed caracal from branch quickfix_issue1436. I'm getting the following error at the beginning of the caracal run:

/users/sourabh/caracal_3c273/caracal_env_3c273/bin/caracal:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
  __import__('pkg_resources').require('caracal==1.0.6')
2024-01-23 15:14:59 CARACal INFO: Invoked as /users/sourabh/caracal_3c273/caracal_env_3c273/bin/caracal -c crosscal.yml -ct singularity -sid /software/astro/caracal/STIMELA_IMAGES_1.7.7
2024-01-23 15:14:59 CARACal ERROR: configuration file crosscal.yml fails to validate, list of errors follows:

out file:

  at top level:

"load()" has been removed, use

  yaml = YAML(typ='rt')
  yaml.load(...)

and register any classes that you use, or check the tag attribute on the loaded data,
instead of file "/users/sourabh/caracal_3c273/caracal/caracal/dispatch_crew/config_parser.py", line 144

                config_content = ruamel.yaml.load(file, ruamel.yaml.RoundTripLoader, version=(1, 1))

With the standard installation from the master branch, the pipeline proceeds with the same configuration file and stops after some time with an error that 3C273 is not in the CASA calibrator list. Thanks for the help.

sourabhpaul commented 5 months ago

Also, is it possible to insert a source model manually using setjy? From the caracal manual, it looks like this can be done with set_model? Thanks.

KshitijT commented 5 months ago

@sourabhpaul please see #1554 , it's the same error you are getting.

Athanaseus commented 5 months ago

Hi @sourabhpaul , thanks for opening up this issue.

I found a similar https://github.com/caracal-pipeline/caracal/issues/1436 and as per the suggestions posted there I installed caracal from branch quickfix_issue1436

I've synced this branch with master; please pull and re-install

Best regards

sourabhpaul commented 4 months ago

Thanks!