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carolzhou
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multiPhATE2
multiPhATE with comparative genomics
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Error: mdb_env_open: No such file or directory
#44
ricmedveterinario
opened
1 year ago
24
Is there a way to generate an automatic genome list in the multiphate.config file?
#43
matheusgarciaufg
closed
1 year ago
1
ERROR: Cannot verify blast database
#42
carmennns2
closed
1 year ago
7
multiPhATE2 program in a multi-user environment
#41
ricmedveterinario
closed
1 year ago
1
NCBI Virus and Protein Errors
#40
lexikazen
closed
1 year ago
4
How to get the faa file for the superset gff?
#39
ilyavs
closed
2 years ago
2
Support json format for input config file
#38
ilyavs
closed
2 years ago
3
Running VOGs hmm/profile search
#37
LeonardoMorenoG
closed
2 years ago
4
Can't Find GFF Output Files
#36
joshuakirsch
closed
2 years ago
4
gene numbers from "consensus" should be consecutive
#35
xvazquezc
closed
3 years ago
3
Empty phate_sequenceAnnotation_main.gff and .out
#34
uuwuyi
closed
3 years ago
0
need to check for empty lines in processProdigal
#33
tsp-kucbd
closed
2 years ago
1
how long is "a while" for VOG installation using dbPrep_getDBs.py ?
#32
Calvinblue
closed
3 years ago
2
Error: NCBI C++ Exception:
#31
smeeta
closed
3 years ago
16
I think the non-alphanumeric characters in your fasta file header are causing the failure. If the above fix does not work, then feel free to re-open this issue. Thank you for your interest in multiPhATE2.
#30
smeeta
closed
3 years ago
9
my genome contains zero length ?
#29
smeeta
closed
3 years ago
3
How to annotate the gene name to the ORF output from multiPhATE2
#28
smeeta
closed
3 years ago
17
sample.multiPhate.config
#27
smeeta
closed
3 years ago
4
Can't get annotation out of custom genecall
#26
Calvinblue
closed
3 years ago
11
"consensus" parameter doesn't seem to work as intended
#25
Calvinblue
closed
3 years ago
4
8mar2021: fixed paralogs; added ext annots; scripts 4 venn
#24
carolzhou
opened
3 years ago
0
Add a line to phate_annotation.py
#23
rfcohen
closed
3 years ago
1
Can't get genemark to run
#22
rfcohen
closed
3 years ago
7
Python syntax bug?
#21
iddoweiner
closed
3 years ago
5
GeneMarkS - gmhmmp: error, on open file /heu_11.mod
#20
BlackBee-270
closed
3 years ago
10
missing annotations in final gff for tRNAs
#19
xvazquezc
closed
3 years ago
2
Functional Annotation Only - continued
#18
rfcohen
closed
3 years ago
9
crash at processing gene calls
#17
xvazquezc
closed
3 years ago
7
Functional Annotation Only
#16
rfcohen
closed
3 years ago
5
conda environment notes
#15
xvazquezc
closed
3 years ago
4
Update phate_trna.py
#14
xvazquezc
closed
3 years ago
5
Update dbPrep_getDBs.py
#13
xvazquezc
closed
3 years ago
1
Brand new pull causes errors
#12
rfcohen
closed
3 years ago
3
Minor compatibility improvements
#11
linsalrob
closed
3 years ago
0
Updating the README
#10
linsalrob
closed
3 years ago
0
pVOGs database incomplete
#9
linsalrob
closed
3 years ago
1
cgpThreads does not check for all
#8
linsalrob
closed
3 years ago
1
phate threads should allow ALL
#7
linsalrob
closed
3 years ago
3
Adding URLs to the README
#6
linsalrob
closed
3 years ago
2
Parallelism problem
#5
vihoikka
closed
3 years ago
7
Regarding phate_sequenceAnnotation_main.out results
#4
ShailNair
closed
3 years ago
13
Error while running gene calling-consensus_1_geneCall' has zero length
#3
ShailNair
closed
3 years ago
17
Update readme and added processor count parameter
#2
jeffkimbrel
closed
4 years ago
0
multithreading
#1
jeffkimbrel
closed
4 years ago
0