carpentries-incubator workflows-nextflow issues

carpentries-incubator / workflows-nextflow

Workflow management with Nextflow and nf-core

https://carpentries-incubator.github.io/workflows-nextflow/

Other

25 stars 33 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Fix input qualifier for the QUANT step and minor typo in the page

#170 chiasinL closed 2 months ago
2
Update Workflows to Version 0.16.6

#169 carpentries-bot opened 3 months ago
1
Update 04-processes-part1.md

#168 ggrimes opened 3 months ago
1
Ggrimes patch 7

#167 ggrimes closed 3 months ago
2
@Nextflow review @HadrienG remoev $ from command in setup.md

#166 ggrimes closed 3 months ago
1
@Nextflow review @HadrienG user-specified file names

#165 ggrimes opened 3 months ago
0
@Nextflow review @HadrienG process_rscript.nf: including the ShortRead package in the conda environment would let the learners run the script.

#164 ggrimes closed 3 months ago
1
Nextflow review @HadrienG First objective: "How do I get data into Nextflow?" is misleading, we've already done that in episode 2: parametrisation

#163 ggrimes closed 3 months ago
1
Issue_148

#162 kubranarci opened 3 months ago
2
Nextflow review @HadrienG DSL2: hlatyping pipeline is too old

#161 ggrimes closed 3 months ago
1
add description for work directory

#160 kubranarci closed 3 months ago
1
Update Carpentries Gitpod environment

#159 mahesh-panchal closed 3 months ago
12
Ggrimes patch 1

#158 ggrimes closed 4 months ago
1
Update reference.md

#157 ggrimes closed 4 months ago
1
Glossary

#156 ggrimes closed 4 months ago
1
Nfcore demo

#155 ggrimes closed 4 months ago
1
Update setup.md

#154 ggrimes closed 4 months ago
1
Command error: ln: failed to create symbolic link : Operation not supported

#153 unugwa opened 4 months ago
4
Update Workflows to Version 0.16.5

#152 carpentries-bot closed 5 months ago
1
Nextflow review @bobturneruk ep09, dockeroptions

#151 ggrimes closed 5 months ago
0
Nextflow review @bobturneruk cc-by

#150 ggrimes closed 5 months ago
1
Nextflow review @bobturneruk ep11, new content

#149 ggrimes opened 5 months ago
1
Nextflow review @bobturneruk ep11, Key points

#148 ggrimes opened 5 months ago
0
Update environment.yml

#147 ggrimes closed 4 months ago
1
update ep2 removed yaml reference fixes #115

#146 ggrimes closed 7 months ago
2
Pythoncode

#145 ggrimes closed 7 months ago
1
Debug

#144 ggrimes closed 7 months ago
1
Nextflow review @bobturneruk ep11, Graphviz

#143 ggrimes closed 3 months ago
0
Nextflow review @bobturneruk ep11, Ternary operators

#142 ggrimes opened 7 months ago
1
Nextflow review @bobturneruk ep11, error script 6

#141 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep11, FASTQC

#140 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep11, recap

#139 ggrimes opened 7 months ago
1
Update 10-workflow_checkpoint_caching.md

#138 ggrimes closed 4 months ago
1
Nextflow review @bobturneruk ep10, definition of command wrapper

#137 ggrimes closed 5 months ago
1
Nextflow review @bobturneruk ep10, wc.nf

#136 ggrimes closed 7 months ago
0
Nextflow review @bobturneruk ep9, fastp conda error, libmamba

#135 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep8, finale exercise

#134 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep8, hash reporting

#133 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep7, complex operator examples

#132 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep7 , regex

#131 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep6 MULTIQC error

#130 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep5, symbolic links

#129 ggrimes closed 7 months ago
2
Nextflow review @bobturneruk ep5 , CPUs, cores and threads

#128 ggrimes opened 7 months ago
1
Nextflow review @bobturneruk ep5 , work directory

#127 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep4 ${...}

#126 ggrimes opened 7 months ago
1
Nextflow review @bobturneruk ep4 shell directive

#125 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep4 python/Rscript materials

#124 ggrimes opened 7 months ago
0
Nextflow review @bobturneruk ep4 python/Rscript script

#123 ggrimes opened 7 months ago
1
Nextflow review @bobturneruk ep4 R setup

#122 ggrimes closed 7 months ago
2
Nextflow review @bobturneruk ep4, -process.echo

#121 ggrimes closed 7 months ago
1