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catmaid / CATMAID

Collaborative Annotation Toolkit for Massive Amounts of Image Data
https://catmaid.org
GNU General Public License v3.0
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connectomics image-annotation network-analysis neuroscience

readme

CATMAID

The Collaborative Annotation Toolkit for Massive Amounts of Image Data

For more information, see http://www.catmaid.org/

Status

This reflects the status of our tests:

CI Coverage Status

Releases

Versions that we consider stable are tagged as release and are merged into the repository's master branches. These versions are additionally available as bundled download.

Development

We follow a development model that borrows ideas from GitFlow, but is less strict. Regular development happens in the dev branch or topic branches that are later merged into dev. Release branches are created off of dev and contain additional release preparation changes. When ready, a release commit is tagged and then merged into master and dev. In case a release requires additional fixes maintenance branches are created based on the respective release commits. Maintenance branches are considered stable and are merged into both master and dev.

Screenshots

CATMAID's neuron tracing and analysis environment in the FAFB Drosophila dataset:

Image of CATMAID's neuron tracing and analysis environment in the FAFB Drosophila dataset

CATMAID's neuron tracing environment and NBLAST similarity analysis in the L1 Drosophila dataset:

Image of CATMAID's neuron tracing environment and NBLAST similarity analysis in the L1 Drosophila dataset

Drosophila multi-channel light data with different ontology annotation and analysis tools:

Image of Drosophila light data and different ontology annotation and analysis tools