cayek
commented
5 years ago Hi nicholasprice79 !
This repository is deprecated. Tess3r is now hosted here: https://github.com/bcm-uga/TESS3_encho_sen
Thank you for your interest in our work.
Open nicholasprice79 opened 5 years ago
cayek
commented
5 years ago Hi nicholasprice79 !
This repository is deprecated. Tess3r is now hosted here: https://github.com/bcm-uga/TESS3_encho_sen
Thank you for your interest in our work.
Hi,
I am trying to install tass3r on R 3.6.1 Windows 64 bit and I am having the following issue
Downloading GitHub repo cayek/TESS3@master Your system is ready to build packages! Installing 5 packages: fields, RColorBrewer, spam, maps, dotCall64 trying URL 'https://cran.revolutionanalytics.com/bin/windows/contrib/3.6/fields_9.8-6.zip' Content type 'application/zip' length 3961568 bytes (3.8 MB) downloaded 3.8 MB
trying URL 'https://cran.revolutionanalytics.com/bin/windows/contrib/3.6/RColorBrewer_1.1-2.zip' Content type 'application/zip' length 55569 bytes (54 KB) downloaded 54 KB
trying URL 'https://cran.revolutionanalytics.com/bin/windows/contrib/3.6/spam_2.2-2.zip' Content type 'application/zip' length 2677007 bytes (2.6 MB) downloaded 2.6 MB
trying URL 'https://cran.revolutionanalytics.com/bin/windows/contrib/3.6/maps_3.3.0.zip' Content type 'application/zip' length 3696118 bytes (3.5 MB) downloaded 3.5 MB
trying URL 'https://cran.revolutionanalytics.com/bin/windows/contrib/3.6/dotCall64_1.0-0.zip' Content type 'application/zip' length 122770 bytes (119 KB) downloaded 119 KB
package ‘fields’ successfully unpacked and MD5 sums checked package ‘RColorBrewer’ successfully unpacked and MD5 sums checked package ‘spam’ successfully unpacked and MD5 sums checked package ‘maps’ successfully unpacked and MD5 sums checked package ‘dotCall64’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in C:\Users\Nicholas Price\AppData\Local\Temp\RtmpsRg0R3\downloaded_packages
checking for file 'C:\Users\Nicholas Price\AppData\Local\Temp\RtmpsRg0R3\remotes884250c38eb\cayek-TESS3-92cb338\tess3r/DESCRIPTION' ...
checking for file 'C:\Users\Nicholas Price\AppData\Local\Temp\RtmpsRg0R3\remotes884250c38eb\cayek-TESS3-92cb338\tess3r/DESCRIPTION' ...
√ checking for file 'C:\Users\Nicholas Price\AppData\Local\Temp\RtmpsRg0R3\remotes884250c38eb\cayek-TESS3-92cb338\tess3r/DESCRIPTION'
preparing 'tess3r': (539ms) checking DESCRIPTION meta-information ...
checking DESCRIPTION meta-information ...
√ checking DESCRIPTION meta-information
cleaning src
checking for LF line-endings in source and make files and shell scripts
checking for empty or unneeded directories (858ms)
looking to see if a 'data/datalist' file should be added
building 'tess3r_0.1.tar.gz'
installing source package 'tess3r' ... using staged installation libs C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c wrapper_tess3.c -o wrapper_tess3.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c wrapper_createdataset.c -o wrapper_createdataset.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c wrapper_crossEntropy.c -o wrapper_crossEntropy.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c bituint/bituint.c -o bituint/bituint.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c bituint/calc_bituint.c -o bituint/calc_bituint.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c bituint/io_geno_bituint.c -o bituint/io_geno_bituint.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c bituint/slice_bituint.c -o bituint/slice_bituint.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c bituint/thread_bituint.c -o bituint/thread_bituint.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c createDataSet/createDataSet.c -o createDataSet/createDataSet.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c createDataSet/error_cds.c -o createDataSet/error_cds.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c createDataSet/print_cds.c -o createDataSet/print_cds.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c createDataSet/register_cds.c -o createDataSet/register_cds.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c crossEntropy/crossEntropy.c -o crossEntropy/crossEntropy.o crossEntropy/crossEntropy.c: In function 'crossEntropy': crossEntropy/crossEntropy.c:55:22: warning: variable 'tok' set but not used [-Wunused-but-set-variable] char token, *tok; ^ C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c crossEntropy/error_ce.c -o crossEntropy/error_ce.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c crossEntropy/print_ce.c -o crossEntropy/print_ce.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c crossEntropy/register_ce.c -o crossEntropy/register_ce.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/io_data_double.c -o io/io_data_double.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/io_data_float.c -o io/io_data_float.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/io_data_int.c -o io/io_data_int.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/io_error.c -o io/io_error.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/io_tools.c -o io/io_tools.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c io/print_bar.c -o io/print_bar.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/cholesky.c -o matrix/cholesky.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/error_matrix.c -o matrix/error_matrix.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/normalize.c -o matrix/normalize.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/slice_matrix.c -o matrix/slice_matrix.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/data.c -o matrix/data.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/inverse.c -o matrix/inverse.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/rand.c -o matrix/rand.o matrix/rand.c: In function 'init_random': matrix/rand.c:119:3: warning: implicit declaration of function 'getpid' [-Wimplicit-function-declaration] s = (unsigned long) mix(clock(), time(NULL), getpid()); ^ C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/sylvester.c -o matrix/sylvester.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/diagonalize.c -o matrix/diagonalize.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/matrix.c -o matrix/matrix.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/random_projection.c -o matrix/random_projection.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c matrix/thread_matrix.c -o matrix/thread_matrix.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c nnlsm/blockpivot.c -o nnlsm/blockpivot.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c nnlsm/nnlsm.c -o nnlsm/nnlsm.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c nnlsm/solvenormaleqcomb.c -o nnlsm/solvenormaleqcomb.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c nnlsm/sort.c -o nnlsm/sort.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/als.c -o sNMF/als.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/als_k1.c -o sNMF/als_k1.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/criteria.c -o sNMF/criteria.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/print_snmf.c -o sNMF/print_snmf.o sNMF/print_snmf.c: In function 'print_summary_snmf': sNMF/print_snmf.c:120:3: warning: unknown conversion type character 'l' in format [-Wformat=] (long long)(param->seed), param->tolerance, param->num_thrd); ^ sNMF/print_snmf.c:120:3: warning: format '%G' expects argument of type 'double', but argument 12 has type 'long long int' [-Wformat=] sNMF/print_snmf.c:120:3: warning: format '%d' expects argument of type 'int', but argument 13 has type 'double' [-Wformat=] sNMF/print_snmf.c:120:3: warning: too many arguments for format [-Wformat-extra-args] sNMF/print_snmf.c: In function 'write_summary_results_snmf': sNMF/print_snmf.c:150:2: warning: implicit declaration of function 'fopen_write' [-Wimplicit-function-declaration] m_File = fopen_write(output_file_summary); ^ sNMF/print_snmf.c:150:9: warning: assignment makes pointer from integer without a cast m_File = fopen_write(output_file_summary); ^ C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/sNMF.c -o sNMF/sNMF.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/thread_Q.c -o sNMF/thread_Q.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/als_F.c -o sNMF/als_F.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/als_Q.c -o sNMF/als_Q.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/error_snmf.c -o sNMF/error_snmf.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/register_snmf.c -o sNMF/register_snmf.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/thread_F.c -o sNMF/thread_F.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c sNMF/thread_snmf.c -o sNMF/thread_snmf.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/beta_distribution.c -o stats/beta_distribution.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/gamma_density.c -o stats/gamma_density.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/ln_beta_function.c -o stats/ln_beta_function.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/beta_function.c -o stats/beta_function.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/gamma_distribution.c -o stats/gamma_distribution.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/ln_gamma_function.c -o stats/ln_gamma_function.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/entire_incomplete_gamma_function.c -o stats/entire_incomplete_gamma_function.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/gamma_dist_tables.c -o stats/gamma_dist_tables.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/student_t_distribution.c -o stats/student_t_distribution.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/factorial.c -o stats/factorial.o C:/Rtools/mingw_64/bin/gcc -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -std=gnu99 -mtune=generic -c stats/gamma_function.c -o stats/gamma_function.o C:/Rtools/mingw_64/bin/g++ -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -mtune=generic -c spatialRegularizationTools/spatialRegularizationTools.cpp -o spatialRegularizationTools/spatialRegularizationTools.o In file included from ./external/Eigen/Cholesky:24:0, from ./external/Eigen/Dense:3, from ./external/Eigen/Eigen:1, from spatialRegularizationTools/spatialRegularizationTools.cpp:23: ./external/Eigen/src/Cholesky/LDLT.h: In member function 'void Eigen::internal::solve_retval<Eigen::LDLT<MatrixType, _UpLo>, Rhs>::evalTo(Dest&) const': ./external/Eigen/src/Cholesky/LDLT.h:505:39: warning: typedef 'Scalar' locally defined but not used [-Wunused-local-typedefs] typedef typename LDLTType::Scalar Scalar; ^ spatialRegularizationTools/spatialRegularizationTools.cpp: In function 'void unitTest(double, double, double, double, unsigned int, unsigned int, unsigned int, double, const VectorXd&)': spatialRegularizationTools/spatialRegularizationTools.cpp:237:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j = 0; j < Kn; j++) ^ spatialRegularizationTools/spatialRegularizationTools.cpp: In function 'double update_spatial_Q(double, double, double, double, unsigned int, unsigned int, unsigned int, double)': spatialRegularizationTools/spatialRegularizationTools.cpp:297:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int j = 0; j<Kn; j++) ^ C:/Rtools/mingw_64/bin/g++ -I"C:/PROGRA~1/R/R-3.6.1/include" -DNDEBUG -I. -I"C:/Program Files/R/R-3.6.1/library/Rcpp/include" -O2 -Wall -mtune=generic -c Fst/Fst.cpp -o Fst/Fst.o In file included from ./external/Eigen/Cholesky:24:0, from ./external/Eigen/Dense:3, from ./external/Eigen/Eigen:1, from Fst/Fst.cpp:23: ./external/Eigen/src/Cholesky/LDLT.h: In member function 'void Eigen::internal::solve_retval<Eigen::LDLT<MatrixType, _UpLo>, Rhs>::evalTo(Dest&) const': ./external/Eigen/src/Cholesky/LDLT.h:505:39: warning: typedef 'Scalar' locally defined but not used [-Wunused-local-typedefs] typedef typename LDLTType::Scalar Scalar; ^ C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o tess3r.dll tmp.def wrapper_tess3.o wrapper_createdataset.o wrapper_crossEntropy.o bituint/bituint.o bituint/calc_bituint.o bituint/io_geno_bituint.o bituint/slice_bituint.o bituint/thread_bituint.o createDataSet/createDataSet.o createDataSet/error_cds.o createDataSet/print_cds.o createDataSet/register_cds.o crossEntropy/crossEntropy.o crossEntropy/error_ce.o crossEntropy/print_ce.o crossEntropy/register_ce.o io/io_data_double.o io/io_data_float.o io/io_data_int.o io/io_error.o io/io_tools.o io/print_bar.o matrix/cholesky.o matrix/error_matrix.o matrix/normalize.o matrix/slice_matrix.o matrix/data.o matrix/inverse.o matrix/rand.o matrix/sylvester.o matrix/diagonalize.o matrix/matrix.o matrix/random_projection.o matrix/thread_matrix.o nnlsm/blockpivot.o nnlsm/nnlsm.o nnlsm/solvenormaleqcomb.o nnlsm/sort.o sNMF/als.o sNMF/als_k1.o sNMF/criteria.o sNMF/print_snmf.o sNMF/sNMF.o sNMF/thread_Q.o sNMF/als_F.o sNMF/als_Q.o sNMF/error_snmf.o sNMF/register_snmf.o sNMF/thread_F.o sNMF/thread_snmf.o stats/beta_distribution.o stats/gamma_density.o stats/ln_beta_function.o stats/beta_function.o stats/gamma_distribution.o stats/ln_gamma_function.o stats/entire_incomplete_gamma_function.o stats/gamma_dist_tables.o stats/student_t_distribution.o stats/factorial.o stats/gamma_function.o spatialRegularizationTools/spatialRegularizationTools.o Fst/Fst.o -LC:/PROGRA~1/R/R-3.6.1/bin/x64 -lRlapack -LC:/PROGRA~1/R/R-3.6.1/bin/x64 -lRblas -lgfortran -lm -lquadmath -lstdc++ -LC:/PROGRA~1/R/R-3.6.1/bin/x64 -lR installing to C:/Program Files/R/R-3.6.1/library/00LOCK-tess3r/00new/tess3r/libs/x64 R data * moving datasets to lazyload DB inst ** byte-compile and prepare package for lazy loading Fatal error: cannot open file 'C:\Users\Nicholas': No such file or directory
ERROR: lazy loading failed for package 'tess3r'