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cbalbin-bio / pymol-color-alphafold

PyMOL extension to color AlphaFold structures by confidence (pLDDT).
MIT License
60 stars 22 forks source link

Non-AlphaFold colors #4

Open T22-teletraan opened 2 months ago

T22-teletraan commented 2 months ago

In some of my predicted structures created from AlphaFold 3, PyMOL shows colors such as purple or green. Is it meant to be there, or is this an error of some sort?

Attaching an image to show an example. Screenshot 2024-06-25 105407

Hope to hear from someone soon!

T22-teletraan commented 2 months ago

Found another example for green coloration.

image

NicoFrL commented 1 month ago

The original version of @cbalbin-bio excludes values that match exactly 90, 70, and 50. It's unfortunate when this happens, as sometimes the pLDDT values match these exact numbers.

I have submitted a pull request with code modifications to address this issue and update the script. You can find the details of the changes in the pull request. Best