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cbalbin-bio / pymol-color-alphafold

PyMOL extension to color AlphaFold structures by confidence (pLDDT).
MIT License
70 stars 22 forks source link
alphafold alphafold2 bioinformatics computational-biology protein-structure pymol pymol-plugin structural-biology

readme

This is a pymol extension to color structures from the AlphaFold Protein Structure Database by pLDDT.

  1. Load extension into pymol. In the pymol command prompt:

    run https://raw.githubusercontent.com/cbalbin-bio/pymol-color-alphafold/master/coloraf.py

    Step 1 Screenshot

  2. Invoke the extension in the pymol command prompt as so:

    coloraf model_name

    Step 2 Screenshot