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# AlphaFold2 리뷰
AlphaFold2 논문을 최대한 직관적으로, 자세히 리뷰합니다
[https://www.ai-bio.info/alphafold2-paper-review](https://www.ai-bio.info/alphafold2-paper-review)
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I've tried using the standard alphafold2 setup via docker (converted to a singularity container) via the setup described at https://github.com/kalininalab/alphafold_non_docker, and both result in the …
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Hello! I have pulled the latest repository and noticed that currently chai-1 only saves results in the .cif format. For better usability, could we save the results in both .pdb and .cif formats, simil…
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**Describe the current behavior**
A clear and concise explanation of what is currently happening.
**Describe the expected behavior**
A clear and concise explanation of what you expected to ha…
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Hey,
Where can I find the embeddings produce by AlphaFold as you wrote in your paper?
I want given a protein (amino acid sequence) to be able to get its embedding vector.
Thank you,
Dan
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When running the first cell/installing dependencies of the AlphaFold2_advanced.ipynb notebook within google colab, I am getting a numpy error (below). Any ideas on how to resolve this? Thank you!
…
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# AlphaFold2 - ColabFold - Colab DB
Standard AlphaFold pipeline using MMseqs2
[https://colab-db.github.io/notebooks/colabfold/](https://colab-db.github.io/notebooks/colabfold/)
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AttributeError: module 'collections' has no attribute 'Iterable' [at run Alphafold]
I got this error when I tried to use the Alphafold2 advanced in Google collab. Does anyone know how to fix it? Th…
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Good morning,
I would like to propose you to share another extremely useful example of AF2 usage. Many scientists are using protein embeddings for downstream tasks (i.e. function prediction). [AF2 …
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Hi,
I am encountering an error when using your tool to with structures produced by ColabFold.
Example command used:
```
perl protocol_QSproteome_single_uniprot.pl \
--pdb OG0002542.represe…