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How can i input 2 chains into ESM3 to predict structure? I tried ":" in the sequence like esm2, but returned an error
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Thank you for your remarkable work on AlphaFlow and for making it open source. Recently, while running predict.py to generate protein structures, I consistently encountered abnormal structures. I susp…
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Hi,
I am exploring MolModa and like it a lot. However, I can't see how I can import a protein structure that has not been published yet (i.e. is not in PDB database).
Please advise.
Thank you…
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## I would like to have the FoldSeek score
## No output. It seem to align the structures but never produces output. It says the files are not created.
## Steps to Reproduce (for bugs)
Run bel…
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Hi,
I am processing lots of sequences in a fasta file but esm3-small model failed on the sequence "EHVAATHKTGLDALAELTGAALNSVEKLSELQFQTVRASLEDSTEQGKRVFDARSLHELTALQSEVSQPTEKLVAYGRHLYQIAAGTHAEWRKVAQTRA"…
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The inferred results of the Diffdock-PP model provide information solely about the positions of the C-alpha atoms in the protein backbone. Could you please provide me with detailed information on how …
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When I used boltz-1 to predict the structure of a protein-ligand complex, the protein structure is fine, but the ligand pose is very distorted and rather remote from the pose in a reference x-ray crys…
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Hi! I followed the tutorial and created a protein structure using ESM. Here's my protein:
(.pdb) file is not supported. So, here's a screenshot of the protein! :)
This was very fun, thank you for th…
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Hello,
I would like to please ask if there is any way to modify the structure using an atom in the biotite? I know that the data of individual atoms can be accessed via indexing. For example, if I …