cbcrg tcoffee issues - Githubissues

cbcrg / tcoffee

A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence

http://tcoffee.org

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issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

"code" and "decode" function modifies branch lengths and bootstrap values

#67 kr3118 opened 23 hours ago
1
t_coffee Needed by T-COFFEE Could not be found

#66 alephreish closed 1 month ago
11
REGRESSIVE vs default: different behaviour when printing to STDOUT

#65 lrauschning opened 4 months ago
0
Error in the installation of m-coffee

#64 claceline opened 4 months ago
3
Added multistrap and fixed the ncbiiblast.pl client issue with EBI - impacts psicoffee and expresso

#63 cnotred closed 5 months ago
0
fixed pdb name parsing in case <pdbid>_<smg> in tc_generic_method.pl

#62 cnotred closed 5 months ago
0
Dev

#61 cnotred closed 5 months ago
0
Build fails with strict-aliasing violations.

#60 eli-schwartz closed 5 months ago
3
Synchronizing dev with master

#59 JoseEspinosa closed 1 year ago
0
Fix release process

#58 JoseEspinosa closed 1 year ago
0
T-Coffee installer tarball changed

#57 smoors closed 1 year ago
8
t_coffee segmentation fault in biopython test cases

#56 emollier opened 1 year ago
2
Stable download link doesn't work

#55 pegetive closed 1 year ago
2
Pin new releases for conda

#54 matthdsm closed 1 year ago
7
Correct warning text from xml to json

#53 athbaltzis closed 1 year ago
0
Update file with unreleased pdbs

#52 athbaltzis closed 2 years ago
0
Website tcoffee.org is unavailable (Gateway Timeout)

#51 balling-dev closed 2 years ago
3
please do not edit ~/.bashrc, etc on install

#50 diekhans opened 2 years ago
0
fmcoffee use 1 core

#49 Sanrrone closed 2 years ago
2
Stuck at 100% - tcoffee regressive mode

#48 pentamorfico opened 2 years ago
0
How to set MAX N PID

#47 davidfstein opened 2 years ago
2
Ignore unreleased pdbs

#46 athbaltzis closed 3 years ago
0
Why creating file in a non temp directory

#45 ghost opened 3 years ago
0
TCS provides different outputs depending on the number of CPUs

#44 apcamargo opened 3 years ago
1
include electron microscopy EM structures

#43 athbaltzis closed 3 years ago
0
update ncbiblast wrapper

#42 athbaltzis closed 3 years ago
0
Expresso failed, X-ray and NMR structure templates?

#41 KamillaOJ opened 3 years ago
3
error BLAST Templates

#40 adriludwig opened 3 years ago
2
Running Expresso on local computer (BLAST_FAILURE)

#39 tubiana closed 3 years ago
2
Linux installers installs plugins with incorrect permissions

#38 MartinGuehmann opened 3 years ago
0
Update ebi blast perl rest api

#37 athbaltzis closed 3 years ago
0
PSICoffee - WARNING: [ncbiblast_lwp.pl] failed to produce xml output

#36 AlbanMariette closed 5 months ago
3
TCS scoring results not consistent between local and web TCS - gaps management - T-coffee 13.41.139.ca96b3d

#35 AlbanMariette opened 3 years ago
2
Errors with mcoffee

#34 moibernabeu opened 4 years ago
2
Unable to use t_coffee on large datasets

#33 lalalagartija closed 4 years ago
2
How to use PSI-Coffee on my own computer?

#32 kuangmeng opened 4 years ago
1
printf_system :: should have debug enabled as other printf_system* functions

#31 EricDeveaud opened 4 years ago
0
t_coffee -clean :: inconsistency

#30 EricDeveaud opened 4 years ago
0
lib/util_lib/util.c should use PERL_HEADER value

#29 EricDeveaud opened 4 years ago
0
use env var TMPDIR if defined

#28 EricDeveaud opened 4 years ago
0
MAX_N_PID should be 4194304 on 64bit machines

#27 merkys opened 4 years ago
10
Fix dynamic_msa config file

#26 edgano closed 4 years ago
0
Added new flavour for FAMSA (upgma)

#25 edgano closed 4 years ago
1
new way to count seqs

#24 edgano closed 4 years ago
0
--ERROR: MAX_N_PID exceded -- Recompile changing the value of MAX_N_PID

#23 WellJoea closed 4 years ago
2
distance matrix output

#22 bjlang closed 4 years ago
0
added famsa_msa

#20 edgano closed 4 years ago
0
-output flag not supported when using -reg

#19 edgano opened 4 years ago
0
Filename too long using ALN_DUMP

#18 edgano opened 4 years ago
0
Remove static for tempfile names to avoid race condition

#17 liubovch closed 5 years ago
1