cbg-ethz V-pipe issues - Githubissues

cbg-ethz / V-pipe

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

https://cbg-ethz.github.io/V-pipe/

Apache License 2.0

132 stars 46 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

`cyvcf2 = 0.30.11` leads to `ValueError: numpy.dtype size changed`

#167 GeertvanGeest closed 3 weeks ago
6
Enable Parallel Deconvolution in Lollipop

#166 gordonkoehn closed 1 month ago
2
Enable Parallel Deconvolution in Lollipop

#165 gordonkoehn closed 1 month ago
0
New Logo in README

#164 gordonkoehn closed 1 month ago
1
Typo and Minor Wording Suggestion in getting-started.md

#163 gordonkoehn opened 2 months ago
1
Minor Remodel Edit and Punctuation in About.md

#162 gordonkoehn closed 2 months ago
1
Default deconvolution config is missing

#161 GeertvanGeest opened 2 months ago
0
Workflow error from V-pipe dry run

#160 robertsap opened 2 months ago
3
Revisions VILOCA

#159 LaraFuhrmann opened 2 months ago
1
update feature-benchmark branch

#158 LaraFuhrmann closed 2 months ago
0
Setting VILOCA --windowsize parameter using v-pipe config file not possible

#157 anikajohn opened 4 months ago
0
Updated benchmark

#156 LaraFuhrmann closed 5 months ago
2
improve tutorial_0_install.md

#155 prajwalkulkarni opened 7 months ago
2
Add issue templates

#154 prajwalkulkarni opened 7 months ago
2
Installation Doc Update

#153 hrishikeshh opened 7 months ago
0
Snakemake workflow catalog standardized usage

#152 uniqueg closed 6 months ago
0
Snakemake standardized usage

#151 uniqueg closed 6 months ago
0
adding viloca to the workflow

#150 LaraFuhrmann closed 5 months ago
5
Add virus configs

#149 LaraFuhrmann closed 6 months ago
3
Problem in the deconvolution step

#148 Xuyen21 opened 10 months ago
4
Snakemake dry run 404

#147 helmotw closed 1 year ago
9
Activating snv in sars tutorial leads to error

#146 schlaepferp opened 1 year ago
2
vpipe broken? ModuleNotFoundError: No module named 'pandas'

#145 schlaepferp closed 1 year ago
2
included lofreq in master snake file

#144 mcarrara-bioinfo closed 1 year ago
1
add minimap2 aligner

#143 DrYak closed 1 year ago
0
PredictHaplo fix ouput directory

#142 DrYak closed 1 year ago
1
[Add] monkeypox config + resources

#141 LaraFuhrmann closed 1 year ago
3
Fix diversity measures

#140 LaraFuhrmann closed 1 year ago
1
Missing input files for rule generate_web_visualization

#139 carlottaolivero opened 1 year ago
0
Error in rule hmm_align: HIV in Vpipe

#138 vfdiamante opened 1 year ago
2
hiv-tutorial fails with haplotype_reconstruction: savage, and SAVAGE command output is dumped into terminal instead of log

#137 Masterxilo opened 2 years ago
0
hiv-tutorial works with haploclique, but fails with predicthaplo

#136 Masterxilo opened 2 years ago
0
predicthaplo does not work on sars-cov-2 tutorial

#135 Masterxilo closed 1 year ago
1
[UX issue] multiple GFF

#134 DrYak opened 2 years ago
1
[UX issue] unknown keywords in config file

#133 DrYak opened 2 years ago
1
frameshift_deletion_checks, simBench & Haplotype callers

#132 dimitris-karapliafis closed 2 years ago
6
Feature tutorial - pull new tutorial with example data to master branch

#131 LaraFuhrmann closed 2 years ago
1
[fix] populatin_nucleotide_diversity

#130 LaraFuhrmann closed 2 years ago
3
[fix] population nucleotide diverstiy: corrected handling for multiple variants at same position.

#129 LaraFuhrmann closed 2 years ago
2
fix #127

#128 LaraFuhrmann closed 2 years ago
4
Conflict in quality_assurance.smk with custom datadir-path

#127 LaraFuhrmann closed 2 years ago
0
Warning: All reads at position 4045 in the same reverse orientation ?

#126 Vinoy-UKHSA opened 2 years ago
1
[FEAT] Added sftp sync staging

#125 mcarrara-bioinfo closed 2 years ago
1
SARS-CoV-2 workflow comparison - kindly check if your work is represented correctly

#124 thomasbtf opened 2 years ago
1
Rubicon

#123 DrYak closed 2 years ago
1
please document haploclique.extra_parameters

#122 Masterxilo opened 2 years ago
3
Allow passing arbitrary parameters to haploclique invokation

#121 kpj closed 2 years ago
1
Getting snake error

#120 dstcr opened 2 years ago
23
Running with tutorial dataset giving all empty file

#119 wasimbt opened 2 years ago
6
Pulling back rubicon into master

#118 DrYak closed 2 years ago
1