cbirdlab dDocentHPC issues - Githubissues

cbirdlab / dDocentHPC

hard fork of dDocent, edited to run without interactive user input

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issues

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mkVCF vcfcombine error

#18 ARW-UBT opened 10 months ago
18
dDocentHPC trimmomatic issue

#17 ARW-UBT opened 10 months ago
1
Tabix failed

#16 Royberts opened 2 years ago
0
BWA MEM insert issue

#15 Royberts opened 3 years ago
0
Problem deciding version of bedtools

#14 cbird808 opened 4 years ago
0
enable specification of trimmomatic adapter file

#13 cbird808 opened 4 years ago
0
implement fastp instead of trimmomatic

#12 cbird808 opened 4 years ago
1
awk statement to filter out rbdiv.$CUTOFFS.out faster than grep

#11 ericgarciaresearch closed 4 years ago
1
Adding PCR and optical duplicate removal to pipeline

#10 mkent001 opened 4 years ago
0
change dependency check a little bit, to allow samtools 1.10 be used

#9 mdong closed 4 years ago
0
add a simple implantation of parallel over MPI

#8 mdong closed 4 years ago
0
Make Freebayes Run Multinode and Reduce RAM Hogging

#7 cbird808 opened 4 years ago
1
in mkREF rainbow merge -r and -R cannot be zero and 1

#6 cbird808 opened 4 years ago
0
special_uniq error on some HPC

#5 cbird808 opened 5 years ago
0
Config File issue

#4 jdselwyn closed 5 years ago
2
Type leading to bug

#3 jdselwyn closed 5 years ago
1
Splitting BAM files for parallel freebayes

#2 jdselwyn opened 5 years ago
1
CNV map instructions in config file

#1 jdselwyn opened 5 years ago
1