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cbmi-group / IsoVEM

IsoVEM: Accurate and Robust Isotropic Reconstruction for Volume Electron Microscopy Using a Video Transformer
GNU General Public License v3.0
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Resolution of reconstruction results on EPFL dataset #2

Closed hmzawz2 closed 5 months ago

hmzawz2 commented 5 months ago

Hello, recently I have been reproducing your work based on the EPFL dataset. For calculating the resolution of reconstruction results, I used the code from repository to calculate (parameters are sz=512, psz=5nm zm=1). Under this set of parameters, the calculated resolution of IsoVEM is 27.9nm. Could you please share your calculating code of FSC and parameters were used to calculate the FSC resolution in the IsoVEM paper? Thank you in advance! image

yanzhang81 commented 5 months ago

Hi Hmzawz2，we used the program EMAN2 to calculate the FSC，the specific command we used is: e2proc3d.py model1 --calcfsc=model2 fsc.txt. You can replace the model1 and model2 with your file, and all cross-correlation values are contained in the fsc.txt. Don't hesitate to contact us if you have further problems.

hmzawz2 commented 5 months ago

Thanks, I will do more test.