CDK Nodes for KNIME

These nodes have been describe in the following paper:

• Beisken S, Meinl T, Wiswedel B, de Figueiredo LF, Berthold M, Steinbeck C. KNIME-CDK: Workflow-driven cheminformatics. BMC Bioinformatics. 2013 Aug;14(1):257. https://doi.org/10.1186/1471-2105-14-257

Setting up Eclipse

1. download the Eclipse KNIME SDK 3.5 (not Eclipse itself!)
2. import the four plugins
3. Go to: Window -> Preferences -> Plug-in Development -> Target Platform
4. Add the 3.5 Update Site
5. Edit KNIME 3.3 TP
6. Change the Update Site to http://update.knime.org/analytics-platform/3.5/
7. Select KNIME & Extensions
8. Apply the new target platform

Running KNIME

1. Follow these instructions
2. The test workflows used by the KNIME integration server can be edited via a released KNIME version and the KNIME Public Server Access