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cellarium-ai
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cellarium-ml
Distributed single-cell data analysis.
BSD 3-Clause "New" or "Revised" License
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Fix NaN issue in scvi
#215
sjfleming
closed
1 day ago
0
Remove reduntant resolve_ckpt method
#214
ordabayevy
opened
1 week ago
1
Simplify `AnnDataField`
#213
ordabayevy
closed
1 week ago
0
Use `measured_genes_mask` in `OnePassMeanVarStd`
#212
ordabayevy
opened
2 weeks ago
0
NMF - implement consensus NMF
#211
sjfleming
opened
2 weeks ago
0
Add geneformer_demo to the Docs
#210
ordabayevy
closed
1 week ago
0
`DDPNoParametersStrategy`
#209
ordabayevy
opened
2 weeks ago
0
Distributed fixes & improvements
#208
ordabayevy
closed
1 week ago
0
Support PyTorch Lightning 2.3
#207
ordabayevy
closed
1 week ago
0
`DDPNoParametersStrategy`
#206
ordabayevy
closed
2 weeks ago
1
scvi: ensure categorical covariates and continuous covariates work
#205
sjfleming
opened
2 weeks ago
0
scvi: include the option to limit to a specific set of genes
#204
sjfleming
opened
3 weeks ago
5
We might wanna use Millipede for feature selection for CAS
#203
fedorgrab
opened
4 weeks ago
0
Change type of `var_names_g` to `np.ndarray`
#202
ordabayevy
closed
1 month ago
0
Add predict method to `LogisticRegression`
#201
ordabayevy
closed
1 week ago
0
New pyro version 1.9.1
#200
ordabayevy
closed
1 month ago
0
update nmf.py
#199
ImXman
closed
1 day ago
1
NMF - add tests
#198
sjfleming
opened
1 month ago
0
NMF - implement beta divergence as optional for the loss function
#197
sjfleming
opened
1 month ago
0
Non-negative matrix factorization
#196
sjfleming
opened
1 month ago
0
Implement contrastive learning model and transforms
#195
bricewang
opened
1 month ago
0
Constrain jsonargparse version
#194
ordabayevy
closed
1 month ago
0
Parser key "data.batch_keys" error
#193
fedorgrab
opened
1 month ago
0
Freeze `CellariumModule` transforms
#192
ordabayevy
closed
1 month ago
0
Set `torch.Generator` device in `reset_parameters`
#191
ordabayevy
closed
2 months ago
0
RuntimeError: Expected a 'cuda' device type for generator but found 'cpu' when training logistic regression
#190
fedorgrab
closed
2 months ago
0
Add `iteration_strategy` option to `IterableDistributedAnnDataCollectionDataset`
#189
ordabayevy
closed
2 months ago
0
Add `validation_step`
#188
ordabayevy
closed
2 months ago
0
Anndata schema validation descriptive error message
#187
sjfleming
closed
2 weeks ago
0
Freeze parameters for inference with `.freeze()`
#186
ordabayevy
closed
1 month ago
0
Add `val_dataloader` method
#185
ordabayevy
closed
2 months ago
0
Fix `GatherLayer.backward` and make the test more stringent
#184
ordabayevy
closed
2 months ago
0
OSError: Can't synchronously read data (anndata file)
#183
ordabayevy
opened
2 months ago
1
Make a docs page out of cli_workflow example
#182
ordabayevy
closed
2 months ago
0
Cache throws KeyError for missing entry
#181
bricewang
opened
2 months ago
3
AnnDataSchema validate_anndata fix
#180
sjfleming
closed
2 months ago
3
AnnDataSchema validate_anndata is over-zealous for obs categoricals
#179
sjfleming
closed
2 months ago
6
Refactor negative binomial and add .reconstruct() method
#178
sjfleming
closed
2 months ago
0
Fix bugs found during testing
#177
sjfleming
closed
2 months ago
0
test_scvi from Yang's starting point
#176
sjfleming
closed
2 months ago
0
Add a new `ParallelStrategy` that doesn't require gradient synchronization
#175
ordabayevy
opened
2 months ago
1
Fix README
#174
ordabayevy
closed
2 months ago
0
Improve error messages
#173
ordabayevy
closed
2 months ago
0
Add `GatherLayer` test
#172
ordabayevy
closed
3 months ago
2
NegativeBinomial parametrized by `mu` and `theta`
#171
ordabayevy
closed
2 months ago
2
Fix GatherLayer backward
#170
bricewang
closed
3 months ago
0
scvi - enable batch embeddings, sampling, and freezing of batch bias computations
#169
sjfleming
closed
2 months ago
2
157 scvi improve reset parameters
#168
ImXman
closed
2 months ago
0
scvi - refactor to enable universal model description
#167
sjfleming
closed
2 months ago
0
Add example configs
#166
ordabayevy
closed
2 months ago
0
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