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cellarium-ai
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cellarium-ml
Distributed single-cell data analysis.
BSD 3-Clause "New" or "Revised" License
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Fix `GatherLayer.backward` and make the test more stringent
#184
ordabayevy
closed
4 months ago
0
OSError: Can't synchronously read data (anndata file)
#183
ordabayevy
opened
4 months ago
1
Make a docs page out of cli_workflow example
#182
ordabayevy
closed
4 months ago
0
Cache throws KeyError for missing entry
#181
bricewang
opened
4 months ago
3
AnnDataSchema validate_anndata fix
#180
sjfleming
closed
4 months ago
3
AnnDataSchema validate_anndata is over-zealous for obs categoricals
#179
sjfleming
closed
4 months ago
6
Refactor negative binomial and add .reconstruct() method
#178
sjfleming
closed
4 months ago
0
Fix bugs found during testing
#177
sjfleming
closed
4 months ago
0
test_scvi from Yang's starting point
#176
sjfleming
closed
4 months ago
0
Add a new `ParallelStrategy` that doesn't require gradient synchronization
#175
ordabayevy
opened
4 months ago
1
Fix README
#174
ordabayevy
closed
4 months ago
0
Improve error messages
#173
ordabayevy
closed
4 months ago
0
Add `GatherLayer` test
#172
ordabayevy
closed
4 months ago
2
NegativeBinomial parametrized by `mu` and `theta`
#171
ordabayevy
closed
4 months ago
2
Fix GatherLayer backward
#170
bricewang
closed
4 months ago
0
scvi - enable batch embeddings, sampling, and freezing of batch bias computations
#169
sjfleming
closed
4 months ago
2
157 scvi improve reset parameters
#168
ImXman
closed
4 months ago
0
scvi - refactor to enable universal model description
#167
sjfleming
closed
4 months ago
0
Add example configs
#166
ordabayevy
closed
4 months ago
0
Fix Geneformer docstring formatting
#165
ordabayevy
closed
4 months ago
0
Add short description and code organization section to README.rst
#164
ordabayevy
closed
4 months ago
0
Implement Welford's online algorithm for variance calculation
#163
mbabadi
opened
4 months ago
0
Add scvi test to test_cli.py
#162
sjfleming
closed
4 months ago
0
Test data: categorical obs fields
#161
sjfleming
closed
4 months ago
2
scvi: enable a kubeflow run easily
#160
sjfleming
closed
4 months ago
1
Revert "reset_parameters update"
#159
sjfleming
closed
4 months ago
0
reset_parameters update
#158
ImXman
closed
4 months ago
0
scvi - improve reset_parameters()
#157
sjfleming
closed
5 months ago
7
scvi: make encoder/decoder more flexible
#156
sjfleming
closed
5 months ago
14
Refactor common model code
#155
sjfleming
closed
5 months ago
2
Add shifted data algorithm for variance computation to `OnePassMeanVarStd`
#154
ordabayevy
closed
4 months ago
0
Implementing batch as learnable vector
#153
ImXman
closed
5 months ago
0
Add `predict()` to Cellarium GPT
#152
sjfleming
closed
1 month ago
1
Implement reset_parameters() for scvi
#151
ImXman
closed
5 months ago
1
Refactor the negative binomial code
#150
sjfleming
closed
5 months ago
3
scvi - come up with a test dataset and test current code
#149
sjfleming
closed
5 months ago
1
scvi - refactor the NB distribution
#148
sjfleming
closed
5 months ago
1
scvi - implement `predict()`
#147
sjfleming
closed
5 months ago
1
scvi - implement `reset_parameters()`
#146
sjfleming
closed
5 months ago
3
scvi - promote batch bias vectors to latent variables
#145
sjfleming
closed
4 months ago
7
scvi - use precomputed batch bias vectors
#144
sjfleming
opened
5 months ago
5
scvi - flexibly inject batch covariates into VAE
#143
sjfleming
closed
5 months ago
1
scvi - make encoder and decoder architecture flexible
#142
sjfleming
closed
5 months ago
1
`OnePassLibrarySizeStatistics` to compute library size factors per cell for scVI
#141
sjfleming
opened
5 months ago
0
scvi - refactor common
#140
sjfleming
closed
5 months ago
0
Add scvi test to test_cli.py
#139
sjfleming
closed
4 months ago
0
Write test_scvi.py
#138
sjfleming
closed
4 months ago
1
modified scvi yx
#137
ImXman
closed
5 months ago
1
Use ruff formatter instead of black formatter
#136
ordabayevy
closed
5 months ago
0
scVI
#135
sjfleming
opened
5 months ago
0
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