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cellarium-ai
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cellarium-ml
Distributed single-cell data analysis.
BSD 3-Clause "New" or "Revised" License
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Stateful `IterableDataset`
#261
ordabayevy
opened
3 days ago
0
YAML improvement - do not specify model if using a checkpoint
#260
sjfleming
opened
1 week ago
2
anndata >=0.10.9 introduces ImportError
#259
sjfleming
closed
1 week ago
1
Add `worker_seed` argument to `IterableDistributedAnnDataCollectionDataset`
#258
ordabayevy
closed
1 week ago
0
cNMF - user experience
#257
sjfleming
opened
1 week ago
0
Allow `AnnDataField` to have more than one key
#256
sjfleming
closed
3 weeks ago
0
scvi: NaNs on apple M2 silicon
#255
sjfleming
opened
3 weeks ago
0
Implement categorical covariates
#254
sjfleming
closed
2 days ago
1
Move `cpu_transforms` back to `module_pipeline` at teardown
#253
ordabayevy
closed
3 weeks ago
2
Remove obsolete code
#252
ordabayevy
closed
3 weeks ago
0
Add `cellarium.ml.layers` module
#251
ordabayevy
closed
2 weeks ago
0
Add default `validate` method
#250
ordabayevy
closed
3 weeks ago
0
Add support for `SequentialLR`
#249
ordabayevy
opened
3 weeks ago
0
Add `if TYPE_CHECKING` clauses for type imports
#248
ordabayevy
opened
4 weeks ago
0
Add `if TYPE_CHECKING` clauses to imports
#247
ordabayevy
opened
4 weeks ago
0
Add default implementation for `validation_step`
#246
ordabayevy
closed
3 weeks ago
1
Fix collate_fn
#245
ordabayevy
closed
1 month ago
0
Add a teardown method for `cpu_transforms` to handle multi-use case of a `CellariumModule` object
#244
ordabayevy
closed
3 weeks ago
0
`cpu_transforms` do not get switched to `eval` mode during vaildation
#243
ordabayevy
opened
1 month ago
0
Add `ComputeNorm` callback
#242
ordabayevy
opened
1 month ago
0
Initiate a ZScore transform directly from a OnePassMeanVarStd checkpoint file
#241
sjfleming
opened
1 month ago
1
Allow nested `batch_keys`
#240
ordabayevy
closed
1 month ago
0
`LossScaleMonitor`
#239
ordabayevy
closed
1 month ago
1
`CellariumGPT`
#238
ordabayevy
opened
1 month ago
0
Fix Index import for the new version of anndata
#237
ordabayevy
closed
1 month ago
1
Tutorial Part I: Preprocessing
#236
ordabayevy
closed
3 weeks ago
0
nmf - find ways to speed up model
#235
sjfleming
opened
1 month ago
1
Python 3.8 compatible `CellariumGPT`
#234
ordabayevy
opened
2 months ago
0
Fix `drop_incomplete_batch`
#233
ordabayevy
closed
1 month ago
0
Cnmf yx
#232
ImXman
opened
2 months ago
0
Add new arguments to `CellariumAnnDataDataModule`
#231
ordabayevy
closed
2 months ago
0
Make fixes to `CellariumModule`
#230
ordabayevy
closed
2 months ago
0
Fix pandas groupby FutureWarning
#229
sjfleming
closed
2 months ago
0
Handle addition of `CellariumPipeline`s
#228
sjfleming
closed
2 months ago
2
Handle methods when CellariumPipelines are added
#227
sjfleming
closed
2 months ago
0
Implement "on_predict_epoch_end" in CellariumModule
#226
sjfleming
opened
2 months ago
5
Make transforms adaptable to the input
#225
ordabayevy
opened
3 months ago
1
Auto-generate `example_input_array` property
#224
ordabayevy
opened
3 months ago
0
CPU transforms on dataloader workers
#223
sjfleming
closed
2 months ago
12
Change `IncrementalPCA` default to `perform_mean_correction=True`
#222
ordabayevy
closed
3 months ago
0
Allow deep (nested) attributes in `AnnDataField`
#221
ordabayevy
closed
3 months ago
0
Transforms split into before and after batch transfer
#220
sjfleming
closed
2 months ago
3
Filter `save_hyperparameters` warning
#219
ordabayevy
closed
3 months ago
0
Filter "Attribute 'model' is an instance of `nn.Module` and is already saved during checkpointing."
#218
ordabayevy
closed
3 months ago
0
Your `IterableDataset` has `__len__` defined. In combination with multi-process data loading (when num_workers > 1), `__len__` could be inaccurate if each worker is not configured independently to avoid having duplicate data.
#217
ordabayevy
opened
3 months ago
0
FutureWarning: The default of observed=False is deprecated and will be changed to True in a future version of pandas.
#216
ordabayevy
closed
2 months ago
0
Fix NaN issue in scvi
#215
sjfleming
closed
3 months ago
0
Remove reduntant resolve_ckpt method
#214
ordabayevy
closed
3 months ago
1
Simplify `AnnDataField`
#213
ordabayevy
closed
3 months ago
0
Use `measured_genes_mask` in `OnePassMeanVarStd`
#212
ordabayevy
opened
3 months ago
0
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