cggh / scikit-allel

A Python package for exploring and analysing genetic variation data
MIT License
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Scheduled monthly dependency update for June #396

Closed pyup-bot closed 1 year ago

pyup-bot commented 1 year ago

Update pomegranate from 0.14.8 to 1.0.0.

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Links - PyPI: https://pypi.org/project/pomegranate - Repo: https://github.com/jmschrei/torchegranate

Update cython from 0.29.34 to 0.29.35.

Changelog ### 0.29.35 ``` ==================== Bugs fixed ---------- * A garbage collection enabled subtype of a non-GC extension type could call into the deallocation function of the super type with GC tracking enabled. This could lead to crashes during deallocation if GC was triggered on the type at the same time. (Github issue :issue:`5432`) * Some C compile failures and crashes in CPython 3.12 were resolved. * ``except + nogil`` was syntactically not allowed. ``except +nogil`` (i.e. defining a C++ exception handling function called ``nogil``) is now disallowed to prevent typos. (Github issue :issue:`5430`) * A C compile failure in PyPy 3.10 was resolved. Patch by Matti Picus. (Github issue :issue:`5408`) * Cython modules now use PEP-489 multi-phase init by default in PyPy 3.9 and later. Original patch by Matti Picus. (Github issue :issue:`5413`) * API header files generated by different Cython versions can now be included in the same C file. (Github issue :issue:`5383`) * Function signatures containing a type like `tuple[()]` could not be printed. Patch by Lisandro Dalcin. (Github issue :issue:`5355`) ```
Links - PyPI: https://pypi.org/project/cython - Changelog: https://pyup.io/changelogs/cython/ - Homepage: http://cython.org/

Update dask[array] from 2023.4.1 to 2023.5.1.

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Links - PyPI: https://pypi.org/project/dask

Update pandas from 2.0.1 to 2.0.2.

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Links - PyPI: https://pypi.org/project/pandas

Update ipython from 8.13.0 to 8.13.2.

The bot wasn't able to find a changelog for this release. Got an idea?

Links - PyPI: https://pypi.org/project/ipython - Changelog: https://pyup.io/changelogs/ipython/ - Homepage: https://ipython.org
pyup-bot commented 1 year ago

Closing this in favor of #399