cguccione human_host_filtration issues - Githubissues

cguccione / human_host_filtration

Pipeline which removes human DNA from microbial shotgun samples.

BSD 3-Clause "New" or "Revised" License

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issues

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Add warning if running PE data in SE mode

#14 cguccione opened 3 months ago
1
Update main with bug fixes in develop

#13 cguccione closed 3 months ago
0
Change from cp to mv to save space

#12 cguccione opened 3 months ago
0
SE mode not working as expected

#11 cguccione opened 4 months ago
0
Saving intermediate fastq files after fastp even when SAVE_INTERMEDIATE=1

#10 cguccione opened 4 months ago
0
Movi Updates

#9 cguccione closed 4 months ago
0
Improve links to GRCh38 and CHM13 Download

#8 cguccione opened 7 months ago
0
Pipeline constraints: Uncompressed gz files and "R1/R2" naming

#7 bdpessem opened 7 months ago
0
Code for generating Movi index in the create_indexes.sh

#6 ammalabbasi opened 8 months ago
2
merge final pipeline cleanup

#5 lucaspatel closed 8 months ago
0
Manuscript updates

#4 lucaspatel closed 8 months ago
0
Move CG branch to be up to date with Lucas before further development

#3 cguccione closed 9 months ago
0
Combine changes to ReadMe from Caitlin on Main and Lucas on aligners

#2 cguccione closed 10 months ago
0
Add parallel to conda env

#1 cguccione opened 11 months ago
0