issues
search
chanzuckerberg
/
galago
Interpretation aids for genomic epidemiology
https://chanzuckerberg.github.io/galago/
MIT License
8
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add guardrail around size of tree file
#111
sidneymbell
closed
2 years ago
0
Don't fall over if internal nodes are missing dates
#110
sidneymbell
closed
2 years ago
0
If no location or division ancestral states, fill in with matutils introduce
#109
sidneymbell
opened
2 years ago
0
BUG: epi curve showing more smaples than exist in clade sometimes??
#108
sidneymbell
closed
2 years ago
0
Add toggle for whether to subset available clusters by samples of interest and/or clustering results
#107
sidneymbell
closed
2 years ago
0
Case definition should optionally add matching cases to "cases of interest"
#106
sidneymbell
closed
2 years ago
0
Add glyph to epi curve bars to indicate which are "samples of interest"
#105
sidneymbell
opened
2 years ago
0
Reset state to defaults + route to landing page instead of 'woops'
#104
sidneymbell
closed
2 years ago
0
Scroll to top when you click on 'view full report'
#103
sidneymbell
closed
2 years ago
0
Check that `traverse_preorder` is working properly -- lots of copies of the mrca??
#102
sidneymbell
closed
2 years ago
0
Metadata upload doesn't handle dates properly
#101
sidneymbell
opened
2 years ago
0
Add ability to query based on "includes" statements (e.g., metadata.close_contacts.includes({personA})
#100
sidneymbell
opened
2 years ago
0
Add ability to query based on "or" statements
#99
sidneymbell
opened
2 years ago
0
Enable filtering down to "one per household"
#98
sidneymbell
opened
2 years ago
0
Draft a methods page
#96
sidneymbell
closed
2 years ago
0
Do one more pass after assigning internal node attribute values to resolve ties
#95
sidneymbell
opened
2 years ago
0
Partial port of `matutils introduce`
#94
sidneymbell
closed
2 years ago
1
Think about how to incorporate `confidence` values in clustering results
#93
sidneymbell
opened
2 years ago
0
Clarity edits - running list from UXR round 1
#92
sidneymbell
closed
2 years ago
0
Add visual that clearly shows levels of hierarchy
#91
sidneymbell
closed
2 years ago
0
Make current geography insight --> user's selected variable
#90
sidneymbell
opened
2 years ago
0
Suggest "clusters" based on genetic diversity within vs between clades
#89
sidneymbell
opened
2 years ago
0
User can upload metadata TSV (calredie format)
#88
sidneymbell
closed
2 years ago
0
Implement port of matutils introduce clustering method
#87
sidneymbell
closed
2 years ago
0
Users want to review the tree & the report together
#86
sidneymbell
closed
2 years ago
0
Range of pairwise distances is confusing -- instead need actual pairwise distance values
#85
sidneymbell
closed
2 years ago
0
Make it clear which samples are part of the same / separate transmission chain(s)
#84
sidneymbell
closed
2 years ago
0
Highlight most important user questions
#83
sidneymbell
closed
2 years ago
0
Highlight the "Summary" / "Sit stat" insight component
#82
sidneymbell
closed
2 years ago
0
Make currently selected mrca circle bold
#81
sidneymbell
closed
2 years ago
0
Test nextstrain geo clustering method
#80
sidneymbell
closed
2 years ago
0
Sample name, date and muts on hover; add to samples of interest on click
#79
sidneymbell
opened
2 years ago
0
Reconsider how to overlay metadata in the main scatterplot
#78
sidneymbell
opened
2 years ago
0
Fix bug in `divisionInputOptions` preventing manual tree upload
#77
sidneymbell
closed
2 years ago
0
Fix bug in set logic handling clustering results + samples of interest -> mrca subset
#76
sidneymbell
closed
2 years ago
0
Install redux
#75
sidneymbell
closed
2 years ago
0
ensure crosses are at 0,0 for the sample location
#74
colinmegill
closed
2 years ago
0
Display uncertainty in MRCA time estimates
#73
sidneymbell
closed
2 years ago
0
X axis min should be min date of primary cases, not descendent tips
#72
sidneymbell
closed
2 years ago
0
On sample input, remove samples from the graph that are do not share any common ancestors with at least 1 sample of interest (other than the root)
#71
sidneymbell
closed
2 years ago
0
Sort sample points before plotting to ensure that samples of interest are drawn last / on top
#70
sidneymbell
closed
2 years ago
0
On sample point hover, show all other samples within N mutations & corresponding MRCAs for selected group
#69
sidneymbell
closed
2 years ago
0
On pin node, recalculate mutations to be relative to pinned node rather than root?
#68
sidneymbell
closed
2 years ago
0
Show unrooted subtree of descendents
#67
sidneymbell
closed
2 years ago
2
Brush x axis to narrow timescale of interest
#66
sidneymbell
opened
2 years ago
0
Plot all internal nodes by date, use as sample selectors / "handles" for manipulating scatterplot
#65
sidneymbell
closed
2 years ago
0
Plot all samples by date and mutations from root
#64
sidneymbell
closed
2 years ago
0
Generate report on MRCA pin
#63
sidneymbell
closed
2 years ago
0
Use clustering to disable / hide some internal nodes on mrca selector
#62
sidneymbell
closed
2 years ago
0
Light up samples on mrca hover
#61
sidneymbell
closed
2 years ago
0
Previous
Next