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chanzuckerberg
/
galago
Interpretation aids for genomic epidemiology
https://chanzuckerberg.github.io/galago/
MIT License
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Pop a tiny spinner next to the cluster selection module while computing clusters with Introduction Weight Heuristic
#165
sidneymbell
opened
2 years ago
1
[Bug] Case definition filter updates samples of interest but doesn't show in the box above
#164
sidneymbell
closed
2 years ago
1
[Bug] Typing in sample names explodes after putting in a non-valid sample name and corresponding comma
#163
sidneymbell
closed
2 years ago
0
Allow user to add epi metadata from the main app screen
#162
sidneymbell
opened
2 years ago
0
Allow users to select different location of interest (`home_geo`) within the app interface
#161
sidneymbell
opened
2 years ago
0
Heatmap! :)
#160
sidneymbell
closed
2 years ago
0
Move filters drawer to the left; open by default.
#159
sidneymbell
closed
2 years ago
2
Change left header to a title
#158
sidneymbell
closed
2 years ago
0
[Bug] `state` gets confused when user (1) loads demo (2) back button (3) uploads data
#157
sidneymbell
opened
2 years ago
5
Make the relationship between samples of interest & case definitions clearer
#156
sidneymbell
closed
2 years ago
2
Improve copy in clustering section
#155
sidneymbell
closed
2 years ago
0
Use animation or other indicator to make it more obvious that the report is being regenerated as they click through clades
#154
sidneymbell
closed
2 years ago
1
Add more organization to the report
#153
sidneymbell
opened
2 years ago
0
Once MUI has a component available for file picker buttons, use them
#152
sidneymbell
opened
2 years ago
0
[Suggestion] Make sample coloring mirror mrca hover state coloring to better connect the two plots
#151
sidneymbell
closed
2 years ago
0
[Bug] Toggle button doesn't show activated state
#150
sidneymbell
closed
2 years ago
1
Make blank state report text smaller
#149
sidneymbell
closed
2 years ago
0
Add tooltip callout to point users to where to start
#148
sidneymbell
opened
2 years ago
0
Move demo & upload blurbs to side-by-side on landing page.
#147
sidneymbell
closed
2 years ago
3
Make headers bigger and update copy in upload modal
#146
sidneymbell
closed
2 years ago
0
Move upload flow to modal
#145
sidneymbell
closed
2 years ago
0
Make the banner smaller
#144
sidneymbell
opened
2 years ago
0
Add labels to tree
#143
sidneymbell
closed
2 years ago
1
[Bug] If no tree data, return to upload / landing page
#142
sidneymbell
closed
2 years ago
1
Infer whether branch lengths are given in number of mutations (whole numbers) or subs/site (decimals) and convert to N mutations if necessary
#141
sidneymbell
opened
2 years ago
0
[Suggestion] Show "preview" of changes from clade filter panel but then require confirmation before applying.
#140
sidneymbell
opened
2 years ago
0
[Suggestion] Do subsampling behind the scenes before running matutils clustering
#139
sidneymbell
opened
2 years ago
0
[BUG] Tree viz layout is broken for large clades -- need to adjust simulation params
#138
sidneymbell
closed
2 years ago
2
Move epi curve to summary; fixes #11
#137
sidneymbell
closed
2 years ago
0
Epi curve component should be refactored to move data wrangling, scale prep, etc to util file
#136
sidneymbell
opened
2 years ago
0
Data color scales should be centrally defined
#135
sidneymbell
closed
2 years ago
0
Double check mutation <-> transmission conversions and cutoffs throughout
#134
sidneymbell
closed
2 years ago
0
Change `sidenote` component to a tooltip / popover
#133
sidneymbell
closed
2 years ago
3
[Bug] Network diagram should be positioned in center, not bottom corner, of SVG box
#132
sidneymbell
closed
2 years ago
0
On node click, recolor cluster diagram by distance from selected node
#131
sidneymbell
opened
2 years ago
0
General Questions/Feedback and a text update WRT ClusterTracker/matUtils
#130
jmcbroome
closed
2 years ago
3
Additional tests for UI (?)
#129
sidneymbell
opened
2 years ago
2
Tests for clustering methods
#128
sidneymbell
opened
2 years ago
0
Tests for tree methods
#127
sidneymbell
opened
2 years ago
0
Tests for tree parsing
#126
sidneymbell
opened
2 years ago
2
Add types to state
#125
sidneymbell
opened
2 years ago
0
Add analytics with plausible.io
#124
sidneymbell
closed
2 years ago
1
Set up staging / dev / prod infra
#123
sidneymbell
closed
2 years ago
4
Show active case definition filters in UI when drawer open/closed
#122
sidneymbell
closed
2 years ago
2
Params for N mutations / transmission thresholds should be user controlled
#117
sidneymbell
closed
2 years ago
0
Overlay arbitrary metadata on visualizations
#116
sidneymbell
opened
2 years ago
0
Request to make sections collapsible / hide less-relevant questions
#115
sidneymbell
opened
2 years ago
0
Don't use triangle glyphs in phylo tree / "network" diagram - might be mistaken for directionality
#114
sidneymbell
closed
2 years ago
0
Methods page on how we count mutations
#113
sidneymbell
closed
2 years ago
0
Layout notes
#112
sidneymbell
closed
2 years ago
0
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