choderalab / fah-xchem

Tools and infrastructure for automated compound discovery using Folding@home
MIT License
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Speed up analysis passes #114

Open jchodera opened 3 years ago

jchodera commented 3 years ago

We should identify ways to speed up the analysis passes.

One very expensive part of the current pipeline is the imaging of the protein-ligand complexes to ensure the ligand is still bound to the protein. We can speed this up by removing this step if we are careful to add to perses a zero-energy CustomBondForce bond between a protein atom and a ligand atom.