chopdgd / bfx-tools-wdl

WDL tasks for commonly used BFX tools
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New output parameter for GATK DepthOfCoverage #132

Open mark-welsh opened 4 years ago

mark-welsh commented 4 years ago

For UI issues

Description

When adding -baseCounts as a userString to the DepthOfCoverage, the output will be written to the "output_base_filename" filename. Some workflows require this output.

Proposal

Make an optional output for output_base_filename