chopdgd / bfx-tools-wdl

WDL tasks for commonly used BFX tools
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Support petegene compressed fastq.gz file #166

Closed weixuanfu closed 1 year ago

weixuanfu commented 3 years ago

compressed fastq.gz file (*fasterq) cannot be used by novoalign.

But petelink works with cat.

So we can cat the fasterq file to normal fastq.gz file in the beginning of pipelines.