BAMQUALITY CONTROL - Switch to Sorted bam file

chopdgd / bfx-tools-wdl

WDL tasks for commonly used BFX tools

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BAMQUALITY CONTROL - Switch to Sorted bam file #82

Closed Tayazseven closed 5 years ago

Tayazseven commented 5 years ago

Description

Currently, Alignment subworkflows feed markdups bam file to the BAMQC subworkflow where sorted bam file is being feed on production. produciton bam qc subworkflow

What I Did

Switch to sorted bam file