chriscainx mnnpy issues

chriscainx / mnnpy

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

BSD 3-Clause "New" or "Revised" License

71 stars 31 forks source link

issues

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Unexpected keyword argument {'n_jobs': 8}

#56 Tester3454 opened 7 months ago
0
have doubt with parameter svd_dim?

#55 yuxiaokang-source opened 1 year ago
0
Error when packing anndata object?

#54 cameronyoungpark opened 1 year ago
0
Unexpected keyword argument {'n_jobs' ...}

#53 yjkweon24 opened 1 year ago
2
added instructions for an installation fix

#52 AlexandreHutton closed 1 year ago
1
jupyterlab died when Adjusting variance...

#51 brainfo opened 1 year ago
0
Unexpected keyword argument {'n_jobs': 20}

#50 DRSEI opened 2 years ago
1
scipy cKDTree: `n_jobs` has been renamed `workers`

#49 alexlenail opened 2 years ago
1
Use kwarg `workers` not `n_jobs` for `cKDTree`

#48 scottgigante-immunai closed 1 year ago
0
Illegal instruction (core dumped)

#47 nitinnarwade opened 2 years ago
1
Another issue with installation

#46 sfhill opened 2 years ago
0
python 3.8.8 imports version 0.1.9.5 failed

#45 brainfo opened 2 years ago
0
adding ability to add multiple values of k

#44 jkobject opened 3 years ago
0
Update utils.py

#43 HelloWorldLTY opened 3 years ago
0
arrays used as indices must be of integer (or boolean) type

#42 aheravi opened 4 years ago
12
Fix to address Numba errors

#41 pinin4fjords closed 1 year ago
1
Add `verbose` keyword argument

#40 scottgigante opened 4 years ago
0
Require numba 0.45, temporary fix for #30

#39 scottgigante opened 4 years ago
0
Taking len of `None` when passing matrices instead of anndata

#38 scottgigante opened 4 years ago
1
Multiprocessing error

#37 sichra opened 4 years ago
0
mnn_correct doesn't integrate data

#36 jayypaul opened 4 years ago
0
NumbaDeprecationWarning

#35 jayypaul opened 4 years ago
1
mutliple sets of data using mnn_correct

#34 Zifeng-L closed 4 years ago
2
mnn_correct gives several Numba warnings and IndexError

#33 auesro opened 4 years ago
2
resolved an installation issue

#32 tamjazad closed 1 year ago
0
Overflow error

#31 dawe opened 4 years ago
0
IndexError

#30 adamgayoso opened 4 years ago
3
Failed building wheel for mnnpy

#29 redst4r closed 4 years ago
1
Index out of bounds, Looking for MNN not working.

#28 Ayush-Praveen opened 5 years ago
1
mnnpy.mnn_correct returning a Tuple

#27 Gpasquini opened 5 years ago
1
Error when running a correction with two batches

#26 SamueleSoraggi closed 3 years ago
2
Please make clear of data format required for this software

#25 noobCoding opened 5 years ago
0
mnnpy fails to import with latest version of numba

#24 sinclaircooper opened 5 years ago
5
var_adj / adjust_shift_variance -- is it important / what does it do?

#23 atarashansky opened 5 years ago
0
Is Gaussian kernel being calculated correctly?

#22 dylkot opened 5 years ago
0
Union versus intersection of highly variable genes

#21 LisaSikkema opened 5 years ago
0
Update utils.py to solve error when cos_norm_out = False

#20 LisaSikkema closed 5 years ago
1
Reproducibility of batch correction

#19 sophiamaedler opened 5 years ago
0
Not be able to install

#18 ivonyao opened 5 years ago
1
OverflowError: cannot serialize a bytes object larger than 4 GiB

#17 yxaxaxa closed 5 years ago
6
error when set cos_norm_out=False

#16 yupingz opened 6 years ago
3
Does not install on macOS

#15 veghp opened 6 years ago
13
comput_angle=True generates error

#14 chlee-tabin opened 6 years ago
1
input data type

#13 wangjiawen2013 opened 6 years ago
5
mnnpy returns

#12 wangjiawen2013 opened 6 years ago
3
Default sigma value

#11 yueqiw closed 6 years ago
2
out_batches not being set in transform_input_data() with cos_norm_out=False

#10 ktpolanski opened 6 years ago
2
no response at Performing cosine normalization...

#9 zacharylau10 opened 6 years ago
5
improve readme

#8 stashkov opened 6 years ago
1
Cython module _utils not initialized. Fallback to python.

#7 stashkov opened 6 years ago
2