issues
search
clark-lab
/
ngsane
Analysis Framework for Biological Data from High Throughput Sequencing Experiments
Other
5
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add 2.2.x Cufflinks to RNA-Seq.
#35
ghost
opened
10 years ago
0
Add DPI ?
#34
ghost
opened
10 years ago
0
FASTQC read1 image wrong column
#33
BauerLab
closed
10 years ago
1
Summary.html JSON object parsable
#32
BauerLab
opened
10 years ago
0
Add iterative mapping
#31
Gurado
closed
10 years ago
1
trimmomatic output clashes with (at least) fastqc
#30
noncodo
closed
11 years ago
0
Fastqc recovery
#29
noncodo
closed
11 years ago
1
GTFs for htseqcount script.
#28
ghost
opened
11 years ago
0
RPKMs.
#27
ghost
closed
11 years ago
0
make script get list of all R libraries used in ngsane
#26
Gurado
closed
11 years ago
2
Log R session info
#25
astatham
closed
11 years ago
1
Bowtie2: GENOME_CHROMSIZES needs to be accessible via $FASTA naming conventions
#24
allPowerde
closed
11 years ago
1
basic Trinity package
#23
noncodo
closed
11 years ago
1
fusion--search mod
#22
ghost
closed
10 years ago
1
tophat already uses readgroups
#21
allPowerde
closed
11 years ago
0
presence of runnow.tmp
#20
noncodo
closed
11 years ago
1
Bugfix: bwa failes in paired mode
#19
Gurado
closed
11 years ago
1
Refactor read indicator
#18
Gurado
closed
11 years ago
1
keep track on job progress to allow picking up on interrupted jobs
#17
Gurado
closed
11 years ago
1
Create option to only have properly paired reads included for ht-seq-count.
#16
ghost
closed
11 years ago
1
Verify RNA-SeQC
#15
Gurado
closed
11 years ago
1
Job name too long FASTQC.
#14
ghost
closed
11 years ago
1
SGE Job Arrays
#13
noncodo
opened
11 years ago
2
Add fr-secondstrand support for tophat_cuff.sh
#12
ghost
closed
11 years ago
0
Project directory structure not clear
#11
noncodo
closed
11 years ago
1
trimgalore no worky
#10
noncodo
closed
11 years ago
6
Fix mappedmate error messages
#9
Gurado
closed
11 years ago
1
EdgeR module for DE
#8
ghost
closed
10 years ago
1
Merge adaptor trimming scripts.
#7
ghost
closed
11 years ago
1
streamline jave based program calls
#6
allPowerde
opened
11 years ago
0
Add RNA-SeQC module
#5
ghost
closed
11 years ago
0
Create development branch.
#4
ghost
closed
11 years ago
0
Add functionality to tophat_cuff.sh
#3
ghost
closed
11 years ago
0
extend trigger with mode to obtain the data from a remote server
#2
Gurado
closed
11 years ago
2
Modules and libraries to add.
#1
ghost
closed
11 years ago
1