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clij / clijx-assistant

A user interface for GPU-accelerated image processing using CLIJ2
https://clij.github.io/assistant
BSD 3-Clause "New" or "Revised" License
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Segmentation feature measurements #51

Closed tischi closed 3 years ago

tischi commented 3 years ago

Is there already something to, e.g., extract shape feature measurements? I could not find it... or should I use, e.g., MorpholibJ for this last step?

haesleinhuepf commented 3 years ago

Hi @tischi ,

yes, there is a hand full of measurements available. First of all, from the assistant, you might want to explore the label extension /ratio maps: image

In macro, you can access corresponding measurements via statistics of labeled pixels. There, take a look at the columns "MAX_DISTANCE_TO_MASS_CENTER", "MAX_DISTANCE_TO_MASS_CENTER_RATIO" etc. These measurements are a bit unusual compated to MorphoLibJ and plain ImageJ, but they can efficiently be computed in parallel ;-)

Let me know if this helps!

haesleinhuepf commented 3 years ago

Hey @tischi

did this help? Can I close that issue?

Btw. usage-questions are better discussed on image.sc ;-)