CLIJx-Assistant

CLIJx-Assistant is the eXperiemental sibling of the CLIJ2-assistant with extended functionality under development.

If you use CLIJx-assistant, pleace cite it:

Robert Haase, Akanksha Jain, Stephane Rigaud, Daniela Vorkel, Pradeep Rajasekhar, Theresa Suckert, Talley J Lambert, Juan Nunez-Iglesias, Daniel P Poole, Pavel Tomancak, Eugene W Myers. Interactive design of GPU-accelerated Image Data Flow Graphs and cross-platform deployment using multi-lingual code generation. BioRxiv preprint

CLIJx-Assistant is under development and is subject to change. In case of any issues, please open a thread on image.sc and tag @haesleinhuepf.

[Image data source: Daniela Vorkel, Myers lab, CSBD / MPI CBG]

Overview

• Installation

• In development

  • Drift correction
  • Intensity projection
  • Drift correction
  • Label classification
  • Generate CLIJx / Fiji plugins
  • Export Groovy Script for QuPath
  • Export workflows as Python script using clEsperanto and Napari

• Extensions (in development)

  • Imglib2 extensions
  • ImageJ extensions
  • ImageJ2 extensions
  • BoneJ extensions
  • MorphoLibJ extensions
  • ImageJ 3D Suite extensions
  • SimpleITK extensions

Imprint