Performs filtering against gnomAD and ClinVar datasets. Uses Hail to report records with a population FAF above certain thresholds by gene.
To configure Hail, which this project depends on, please see hail-instructions.md.
This can either be utilized via the Jupyter notebook Clingen-Gnomad-FAF-Report.ipynb which can be opened in the Jupyter notebook environment launched in the Hail connect step.
After running the whole notebook, a file, by default called report.tsv, will be output into the same cloud storage directory that the notebook is running in.